BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1323.p
         (311 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096571|ref|YP_001101646.1| LysR family transcriptional reg...   156   1e-39

>gi|134096571|ref|YP_001101646.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 319

 Score =  156 bits (395), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 157/306 (51%), Gaps = 12/306 (3%)

Query: 7   MNIGAVDLNLLKTFIVIWELRSLTAAADRLHLTQPAVSHALRRLREMFDDPLFVRSTSAM 66
           M+   +DLNLL+ F  +   ++LT AA+ L +TQPAVS+ALRRLR+   D L +R+   +
Sbjct: 1   MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDALGDELVIRTAHGV 60

Query: 67  VPTETAIRLHEPIARALGIIHEALHTHASFDPVTATRTFHLVMSDMSCSHVLPMLMEELA 126
            PT  A  L   + RAL  +  A+ T  +FD   AT TF + M+D + +  LP L+  + 
Sbjct: 61  KPTSRATELWPVVRRALSDLETAV-TPDTFDVSRATTTFRMAMADATAALWLPFLVRAIE 119

Query: 127 HAAPHVSLEVQQMAMENLGAAMRNGDIDLAFGYLPGLPEDCQS-----------QLVLYD 175
             AP +++ +  +        +  GDIDLA G+ PG+     S           + +   
Sbjct: 120 KEAPGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTG 179

Query: 176 DYICMLRRAHPLAGQPLTMENLLQLRYVYANTNTTGHQLAEDVLRNAGVKRDFALRMPHF 235
           +Y+C++R+ HPLA + LT++      ++  + +     L +D L   G +R   L +  F
Sbjct: 180 EYVCVMRKNHPLAKEELTLDTYCAAHHLLVSFSGRAKGLMDDALSEVGRERRILLTVNQF 239

Query: 236 TVAPQIVRHTDLALFLPRSIAERHNLDDAFVLLDLPLEMPRIPVSIYTHTRFSADSGIQW 295
             A ++V  +DL   LPR +     +++A +  DLP  +P + V +  H R + +   +W
Sbjct: 240 FTAGRVVASSDLITVLPRHLIASTGMEEALIAKDLPFSLPEVHVDMLWHERDARNPAHKW 299

Query: 296 LRSLLI 301
           LR  LI
Sbjct: 300 LREQLI 305


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 595,416
Number of extensions: 24205
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 229
Effective length of database: 730,157
Effective search space: 167205953
Effective search space used: 167205953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)