BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1321.p
         (284 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096578|ref|YP_001101653.1| formate dehydrogenase formation...   393   e-111
gi|134093637|ref|YP_001098712.1| putative formate dehydrogenase ...    57   9e-10
gi|134094641|ref|YP_001099716.1| putative formate dehydrogenase ...    54   7e-09

>gi|134096578|ref|YP_001101653.1| formate dehydrogenase formation
           protein subunit FdsC [Herminiimonas arsenicoxydans]
          Length = 276

 Score =  393 bits (1009), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 184/256 (71%), Positives = 219/256 (85%)

Query: 28  VQVDRWRDGQRETVDDVVAEEVPIALEYNGISHAVMMATPTDLEDFALGFSLTEGILAAP 87
           V V++W   +RE  +D VAEEVPIALEYNGISHAVM+A+P DLEDFALGFSL+EGIL  P
Sbjct: 15  VSVEKWDADRREFCEDDVAEEVPIALEYNGISHAVMLASPYDLEDFALGFSLSEGILKDP 74

Query: 88  GELYECEILPGCEGVQVQMRIATERFVALKEKRRNLTGRTGCGLCGAETLEQAVRHPQAV 147
            ELY+CE++PGCEG+QVQM+IATERFVALK+KRRNLTGRTGCGLCGAETL QAVRHP AV
Sbjct: 75  SELYDCEVVPGCEGIQVQMQIATERFVALKDKRRNLTGRTGCGLCGAETLAQAVRHPDAV 134

Query: 148 AAGALFTVQQVHAAFEQMQSRQQLQQVTGATHAAAWMDVEGRIVLVREDVGRHNALDKLI 207
             G  F+ +Q+HA  + MQ++Q+LQ+ TGATHAAAWM+ +G I LVRED+GRHNALDKLI
Sbjct: 135 TGGTSFSGEQIHAGMKAMQAQQRLQRHTGATHAAAWMNADGSIDLVREDIGRHNALDKLI 194

Query: 208 GALAQEGADFSQGAAIITSRASYEMVQKAATVGIGFIAAVSAPTALAIRLAEETDVTLLG 267
           GA+A E  DF  GAA+ITSRASYEMVQK+AT+GI F+AA+SAPT+LAI+LAEE +VTL+G
Sbjct: 195 GAMANEKRDFGHGAALITSRASYEMVQKSATMGIAFLAAISAPTSLAIKLAEEANVTLVG 254

Query: 268 FVRKQGHVVYARPQRL 283
           FVR   HVVYA+  RL
Sbjct: 255 FVRSNSHVVYAQSHRL 270


>gi|134093637|ref|YP_001098712.1| putative formate dehydrogenase
           accessory protein FdhD [Herminiimonas arsenicoxydans]
          Length = 279

 Score = 57.0 bits (136), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 56/109 (51%)

Query: 158 VHAAFEQMQSRQQLQQVTGATHAAAWMDVEGRIVLVREDVGRHNALDKLIGALAQEGADF 217
           ++   + +++ + + +  G+ H  A     G ++   EDVGRHNA+D + G +  +G   
Sbjct: 142 LYKVIDTIRTHRSVYKQAGSVHGCALFSAAGELIHFVEDVGRHNAVDTIAGKMWFDGVGG 201

Query: 218 SQGAAIITSRASYEMVQKAATVGIGFIAAVSAPTALAIRLAEETDVTLL 266
                  T R + EMV K A +GI F+ + S  T +   +AE  +++L+
Sbjct: 202 EDKIFYTTGRLTSEMVMKGAQMGIPFLLSRSGATQMGHMVAERLNMSLI 250


>gi|134094641|ref|YP_001099716.1| putative formate dehydrogenase
           subunit FdhD [Herminiimonas arsenicoxydans]
          Length = 281

 Score = 54.3 bits (129), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%)

Query: 158 VHAAFEQMQSRQQLQQVTGATHAAAWMDVEGRIVLVREDVGRHNALDKLIGALAQEGADF 217
           ++    +++++  +    G+ H       EG +    EDVGRHNA+D + G +  E    
Sbjct: 142 LYKIVNKIRTQDSVYAQAGSVHGCGLFSSEGDLQYFIEDVGRHNAVDSIAGIMWLENISG 201

Query: 218 SQGAAIITSRASYEMVQKAATVGIGFIAAVSAPTALAIRLAEETDVTLL 266
           +      T R + EMV K A +G+ F+ + S  T +   +AE+  +TLL
Sbjct: 202 ADKVFYTTGRLTSEMVIKGAQMGMPFLISRSGTTQMGHLVAEKVTMTLL 250


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 531,776
Number of extensions: 20985
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 3
Length of query: 284
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 203
Effective length of database: 733,452
Effective search space: 148890756
Effective search space used: 148890756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)