BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1319.p (520 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096580|ref|YP_001101655.1| NAD dependent formate dehydroge... 823 0.0 gi|134095026|ref|YP_001100101.1| NADH dehydrogenase I subunit F ... 296 2e-81 gi|134093635|ref|YP_001098710.1| NAD dependent formate dehydroge... 255 3e-69 >gi|134096580|ref|YP_001101655.1| NAD dependent formate dehydrogenase subunit beta: fdsB [Herminiimonas arsenicoxydans] Length = 525 Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/517 (75%), Positives = 445/517 (86%), Gaps = 4/517 (0%) Query: 1 MSTQDIVTIYVPRDSTALALGANQVAEAIRAEADKRGQSIKLVRNGSRGMFWLEPLVEVS 60 MS VTI+VPRDSTALALGAN+ A AI EA RG IKLVRNGSRGMFWLEPLVEV+ Sbjct: 1 MSATKSVTIFVPRDSTALALGANETAAAIVREAKARGIDIKLVRNGSRGMFWLEPLVEVA 60 Query: 61 TAAGRVAYGPVAADDVGSLFDAGLLAGG----QHRLHLGLTEEIPFLKNQERLTFARVGI 116 T AGR+A+GP+ +V LFDAG G H LGLTEEIP+LK QERL F RVGI Sbjct: 61 TDAGRIAFGPIEEHEVAGLFDAGFTTGKAEKQTHPKALGLTEEIPYLKKQERLQFVRVGI 120 Query: 117 IDPLSLEDYLAYDGYVGLKNALAKTPEAIVEEMIASGLRGRGGAAFPTGIKWQTVLRAPA 176 DP+SL+DYLA++GYVGLK A+A P AIV+E+ SGLRGRGGAAFPTGIKW+TVL A A Sbjct: 121 TDPVSLDDYLAHEGYVGLKKAIAMEPAAIVQEVTDSGLRGRGGAAFPTGIKWKTVLGAEA 180 Query: 177 TQKYVVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAALAVGATEGYVYVRSEYPHSIAT 236 QKY+ CNADEGDSGTFSDRM+MEDDPF LIEGMTIA LAV ATEGY+YVRSEYPHSIA Sbjct: 181 DQKYIACNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVNATEGYIYVRSEYPHSIAN 240 Query: 237 MNEAIAIATARGYLGHDILGSGKSFHLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPP 296 +NEAI A A GYLG +ILGSG++F+L+VRK AGAY+CGEETAMLES+EGKRG+VRAKPP Sbjct: 241 LNEAIVAANAAGYLGKNILGSGRTFNLQVRKAAGAYVCGEETAMLESIEGKRGLVRAKPP 300 Query: 297 LPALEGLFGKPTVINNLISLASVPVILARGAEFYKNYGVGRSHGTLPFQLAGNIKQGGLV 356 LPAL+GLFGKPTVINN+ISL++VP+IL+RGA FYK++G+GRS GTLP QLAGN+K GGLV Sbjct: 301 LPALQGLFGKPTVINNVISLSAVPLILSRGATFYKDFGMGRSRGTLPMQLAGNLKYGGLV 360 Query: 357 EKAFGLTLRQLLEDFGGGSASGRPLRAVQMGGPLGAYLPPSQFDTPLDYEAFSAIGAMIG 416 EKAFG+TLR+LL DFGGGS SGRP+RAVQ+GGPLGAY+P S FDTP DYEAF+A+ + +G Sbjct: 361 EKAFGVTLRELLYDFGGGSESGRPIRAVQVGGPLGAYMPESLFDTPFDYEAFAAVASTVG 420 Query: 417 HGGLVAFDDSVDMVKQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANQDRGQQVH 476 HGGLVAFDD+VDM KQARYAM FCAVESCGKCTPCRIGSTRGVEV+DKIIANQ+R QQ+H Sbjct: 421 HGGLVAFDDTVDMAKQARYAMHFCAVESCGKCTPCRIGSTRGVEVMDKIIANQNRPQQIH 480 Query: 477 LLKSLCDTMLNGSLCAMGGMTPFPVLSALNHFPEDFG 513 LL+ LCD M+ GSLCAMG MTPFPVLSALNHFPEDFG Sbjct: 481 LLRDLCDVMVTGSLCAMGNMTPFPVLSALNHFPEDFG 517 >gi|134095026|ref|YP_001100101.1| NADH dehydrogenase I subunit F [Herminiimonas arsenicoxydans] Length = 431 Score = 296 bits (757), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 165/401 (41%), Positives = 235/401 (58%), Gaps = 10/401 (2%) Query: 118 DPLSLEDYLAYDGYVGLKNALAK--TPEAIVEEMIASGLRGRGGAAFPTGIKWQTVLRAP 175 D LE+Y+ GY LK L++ T + ++ E+ AS LRGRGGA FP+G+KW + + Sbjct: 20 DNWGLEEYVKRGGYASLKRILSEGMTSDQVIAEIKASTLRGRGGAGFPSGLKWSFMPKNY 79 Query: 176 ATQKYVVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAALAVGATEGYVYVRSEYPHSIA 235 QKY+VCN+DEG+ GTF DR I+ +P +IEGM IAA A+G + GY Y+ E A Sbjct: 80 EGQKYLVCNSDEGEPGTFKDRDILRYNPHAVIEGMAIAAYAMGVSVGYNYIHGEIFAEYA 139 Query: 236 TMNEAIAIATARGYLGHDILGSGKSFHLEVRKGAGAYICGEETAMLESLEGKRGVVRAKP 295 EA+ A A G+LG ILGS SF L G GAYICGEETA+LES+EGK+G R KP Sbjct: 140 RFEEALEQARAAGFLGDRILGSAYSFQLHAFHGYGAYICGEETALLESIEGKKGQPRFKP 199 Query: 296 PLPALEGLFGKPTVINNLISLASVPVILARGAEFYKNYGVGRSHGTLPFQLAGNIKQGGL 355 P PA GL+GKPT INN + A+VP I GA+ Y G + GT F ++G+++ G Sbjct: 200 PFPASYGLYGKPTTINNTETFAAVPFIFQVGADAYAAMGKPNNGGTKIFSVSGDVENPGN 259 Query: 356 VEKAFGLTLRQLLEDFGGGSASGRPLRAVQMGGPLGAYLPPSQFD----TPLDYEAFSAI 411 E G +LL+ GG G+ L+AV P G+ +P + D T +DY++ + Sbjct: 260 YEIPLGTPFAELLK-LAGGVRGGKKLKAVI---PGGSSVPVVKGDLMMATDMDYDSVAKA 315 Query: 412 GAMIGHGGLVAFDDSVDMVKQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANQDR 471 G+M+G G ++ D++ MVK F ESCG+CTPCR G+ ++ +I Q R Sbjct: 316 GSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGQGR 375 Query: 472 GQQVHLLKSLCDTMLNGSLCAMGGMTPFPVLSALNHFPEDF 512 + + +L S+ D + ++CA+G PV + + +F E+F Sbjct: 376 AEDLDMLNSIADNIQGRTICALGDAAAMPVRAMILNFREEF 416 >gi|134093635|ref|YP_001098710.1| NAD dependent formate dehydrogenase subunit beta Fdh1B [Herminiimonas arsenicoxydans] Length = 567 Score = 255 bits (652), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 155/444 (34%), Positives = 235/444 (52%), Gaps = 19/444 (4%) Query: 71 VAADDVGSLFDAGLLAGGQHRLHLGLTEEIPFLKNQERLTFARVGIIDPLSLEDYLAYDG 130 +AA VG A ++ GQ+ + + + ++T ++D L +Y G Sbjct: 140 IAAPCVGRCEQAPVVVVGQNPIIQATVDSVATAVGSNQITQPVAEVVDFL---EYSKVGG 196 Query: 131 YVGLKNALA--KTPEAIVEEMIASGLRGRGGAAFPTGIKWQTVLRAPATQKYVVCNADEG 188 Y LK ++ + E++++ M SGLRG GGA FP G KW+ ++R + + N DEG Sbjct: 197 YELLKKCISGERDVESVLKTMEDSGLRGLGGAGFPAGRKWR-IVRGEKGPRLMAVNIDEG 255 Query: 189 DSGTFSDRMIMEDDPFTLIEGMTIAALAVGATEGYVYVRSEYPHSIATMNEAIAIATARG 248 + GTF DR+ +E DP +EGM IAA AV Y+Y+R EY H M EA A+ Sbjct: 256 EPGTFKDRVYLEKDPHRFLEGMLIAAWAVDIQTIYIYLRDEY-HGCRVMLEA---ELAKL 311 Query: 249 YLGHDILGSGKSFHLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPALEGLFGKPT 308 I + F +R+GAGAYICGEE+AM+ES+EGKRG+ R +PP A GLFG+PT Sbjct: 312 KANPPIANMPEIF---LRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQVGLFGRPT 368 Query: 309 VINNLISLASVPVILARGAEFYKNYGVGRSHGTLPFQLAGNIKQGGLVEKAFGLTLRQLL 368 + +N +L V IL +G E++ ++G G + ++G +K G+ G+T+++L+ Sbjct: 369 LEHNFETLYWVRDILEKGGEWFTSHGRNGRKGLRSYSVSGRVKNPGVKLAPAGITIQELI 428 Query: 369 EDFGGGSASGRPLRAVQMGGPLGAYLPPSQFDTPLDYEAFSAIGAMIGHGGLVAFDDSVD 428 ++ GG G+ GG G LP S D PLD++ G IG ++ D Sbjct: 429 DEHCGGMLDGQTFYGYLPGGASGGILPASMNDIPLDFDTLQPYGCFIGSAAVIVMSDKDT 488 Query: 429 MVKQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANQDRGQQVHLLKSLCDTMLNG 488 V+ AR M F ESCG+CTPCR+G+ + E+I K + V LL+ L M + Sbjct: 489 AVQAARNMMDFFKHESCGQCTPCRVGTAKAAELIKKPKWD------VGLLEDLSLVMRDS 542 Query: 489 SLCAMGGMTPFPVLSALNHFPEDF 512 S+C +G P P+ + +FP + Sbjct: 543 SICGLGQAAPNPIDCVVKYFPHEL 566 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,051,868 Number of extensions: 47086 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 124 Number of HSP's successfully gapped: 3 Length of query: 520 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 434 Effective length of database: 716,977 Effective search space: 311168018 Effective search space used: 311168018 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)