BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1318.p
         (158 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096581|ref|YP_001101656.1| NAD-dependent formate dehydroge...   221   2e-59
gi|134095027|ref|YP_001100102.1| NADH dehydrogenase subunit E [H...    75   2e-15

>gi|134096581|ref|YP_001101656.1| NAD-dependent formate
           dehydrogenase subunit gamma: FdsG [Herminiimonas
           arsenicoxydans]
          Length = 159

 Score =  221 bits (562), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 101/156 (64%), Positives = 124/156 (79%)

Query: 1   MKRQQVFDVAAVRGIIAERKHMAGAMLPILHGIQEQVGYIPADAVPMIAGELNVSRAEVH 60
           M  +  FD+AAV  IIA RK M GA+LPILH IQ  VGYIP+  VP IA  LN+SRAEVH
Sbjct: 1   MSAEHSFDMAAVESIIASRKEMPGALLPILHDIQNTVGYIPSLVVPAIADGLNISRAEVH 60

Query: 61  GVISFYHFFRQEPAGQHVVQVCRAEACQARGSEALAEHAQNVLGCGFHETSADGQFTLEP 120
           GVI++YHFFRQ PAG+HV+Q+CRAEACQARG E+L +HA+ +LGC FH+ + DG+F+LE 
Sbjct: 61  GVITYYHFFRQHPAGKHVIQICRAEACQARGCESLVDHAKELLGCDFHQITDDGKFSLEV 120

Query: 121 VYCLGQCAIGPNLTLDDELHARVDADKFKRLIQAKR 156
           VYCLGQCA GP + +DD+L+ARV  +KF  LIQAKR
Sbjct: 121 VYCLGQCASGPAIQIDDDLYARVSKEKFNNLIQAKR 156


>gi|134095027|ref|YP_001100102.1| NADH dehydrogenase subunit E
           [Herminiimonas arsenicoxydans]
          Length = 159

 Score = 75.1 bits (183), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 24  GAMLPILHGIQEQVGYIPADAVPMIAGELNVSRAEVHGVISFYHFFRQEPAGQHVVQVCR 83
            A++  L   Q++ G++P + +  +A  L +    V  V +FY+ +  +P G+H + VC 
Sbjct: 25  SAVMAALAIAQDETGWLPPEVMQEVADYLGMPAIAVQEVATFYNMYDTKPVGKHKISVCT 84

Query: 84  AEACQARGSEALAEHAQNVLGCGFHETSADGQFTLEPVYCLGQCAIGPNLTLDDE-LHAR 142
              C   G E  A + ++ LG  + ET+ADGQFTL    C+G C   P + ++++ + + 
Sbjct: 85  NLPCLLSGGERAAHYLKHKLGIDYRETTADGQFTLIEGECMGACGDAPVMIVNNKRMCSF 144

Query: 143 VDADKFKRLIQ 153
           +  DK   L++
Sbjct: 145 MSDDKIDALVE 155


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 302,404
Number of extensions: 11871
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 158
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 83
Effective length of database: 753,222
Effective search space: 62517426
Effective search space used: 62517426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 125 (52.8 bits)