BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1317.p (548 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096596|ref|YP_001101671.1| major facilitator superfamily p... 541 e-155 gi|134095635|ref|YP_001100710.1| putative oxalate/formate antipo... 86 3e-18 gi|134096431|ref|YP_001101506.1| putative oxalate/formate antipo... 73 4e-14 gi|134096402|ref|YP_001101477.1| hypothetical protein HEAR3249 [... 68 1e-12 gi|134095037|ref|YP_001100112.1| hypothetical protein HEAR1832 [... 57 2e-09 >gi|134096596|ref|YP_001101671.1| major facilitator superfamily permease [Herminiimonas arsenicoxydans] Length = 465 Score = 541 bits (1393), Expect = e-155, Method: Compositional matrix adjust. Identities = 284/486 (58%), Positives = 355/486 (73%), Gaps = 35/486 (7%) Query: 4 DFLNKEHTVAKPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGVTAPIACGADVG 63 DF +E +VA PGFNRW+VPPAALA+HLCIG AY FSVF PLSK +G+ +P Sbjct: 3 DFFTRERSVAGPGFNRWMVPPAALAVHLCIGQAYAFSVFNGPLSKVIGIDSP-------- 54 Query: 64 FFAQVFSSSCDWKISMLGWMYTMFFVLLGISAALWGGWLEHAGPRKAGVVAAICWCGGLL 123 + DWK++ LGW++++ V LG++AA G WLE GPR VAA C+ GG + Sbjct: 55 -------APEDWKLTTLGWIFSLAIVFLGLAAAFGGKWLEKVGPRLTMFVAACCFGGGFM 107 Query: 124 ISALGVKTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGA 183 +SALGV HQIWL++LG GV+GG+GLGLGY+SPVSTLIKWFPDRRGMATGMAIMGFGGGA Sbjct: 108 VSALGVHLHQIWLVYLGYGVLGGIGLGLGYVSPVSTLIKWFPDRRGMATGMAIMGFGGGA 167 Query: 184 LVGTPLADALMKKFASPTSVGVWETFVVMAIIYFVFMMAGAFGYRVPPTGWKPAGWTPPV 243 ++G PL+ LM F SPTSVGV ETF+VM ++YF+ MM GA R+P WKPAGWTPPV Sbjct: 168 MIGAPLSVFLMGHFKSPTSVGVTETFIVMGVLYFISMMIGALTIRIPAPDWKPAGWTPPV 227 Query: 244 AKSSATMITQNHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIGIASPMLQEVFGGKLLGV 303 ++ MIT+NHVH+ + PQF+L+WLVLCLNV+AGIGV+G AS M+QE F G++ Sbjct: 228 IENK--MITRNHVHIDQAMKTPQFYLLWLVLCLNVTAGIGVLGQASVMIQETFKGEV--- 282 Query: 304 NIGFNDLSVEQKTAIAALAAGFTGLISLFNIGGRFAWASCSDFFGRKMTYAIFFVLGFVL 363 A AAGF GL+S+FN+GGRF W+S SD+ GRK TY FFVLG +L Sbjct: 283 --------------TVAAAAGFVGLMSVFNMGGRFFWSSISDYLGRKNTYYTFFVLGAIL 328 Query: 364 YVSLPWSAKAGNIPLFVGAVCIILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTAWAT 423 Y +P++ G++ LFV CII+SMYGG F+TVP YLADLFGT+ VG IHGRLLTAW+ Sbjct: 329 YACVPYAGHVGSVALFVMCYCIIVSMYGGSFSTVPVYLADLFGTKFVGGIHGRLLTAWSA 388 Query: 424 AGILGPVVVNYMREYQLSLGMPKSQVYNTTMYILAGMLVLGLICNLLIRPVAAKHFMTPE 483 AG+ GPV+VNY+REYQ++ G+PK Q Y TMYI+AG+L+LG ICNL I+PV AKH M + Sbjct: 389 AGVFGPVLVNYIREYQINHGVPKGQAYEVTMYIMAGLLILGFICNLFIKPVEAKHHMA-D 447 Query: 484 ELAREK 489 + AR K Sbjct: 448 DSARSK 453 >gi|134095635|ref|YP_001100710.1| putative oxalate/formate antiporter [Herminiimonas arsenicoxydans] Length = 437 Score = 86.3 bits (212), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 121/499 (24%), Positives = 198/499 (39%), Gaps = 85/499 (17%) Query: 6 LNKEHTVAKPGFNRW-LVPPAALAIHLCIGMAYGFSVFWLPLSKALGVTAP-IACGADVG 63 +N+ T + G RW + +A+ Y +++F L+K LG T P + + Sbjct: 1 MNQIKTTSSSGATRWWQLFFGVVAMMAISSPQYVWALFTSELTKGLGATLPQVQVTFAIL 60 Query: 64 FFAQVFSSSCDWKISMLGWMYTMFFVLLGISAALWGGWLEHAGPRKAGVVAAICWCGGLL 123 AQ F S G ++ GPR + CG +L Sbjct: 61 IVAQTFLSPFQ------------------------GYLIDKFGPRM------LLSCGAIL 90 Query: 124 IS---ALGVKTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFG 180 + L IW ++L G++GGVG G+ Y+ + +++WFPDRRG A GM G+G Sbjct: 91 TALSWILASGVTGIWGLYLTYGLLGGVGTGIIYVGVIGLMVQWFPDRRGFAVGMVAAGYG 150 Query: 181 GGALVGTPLADALMKKFASPTSVGVWETFVVMAIIYFVFMMAGAFGYRVPPTGWKPAGWT 240 GA++ T +K S GV T V+ +I V +A A G R P + A Sbjct: 151 FGAIMTTFAISMSIK------SSGVASTLVMFGVIIGVVGLAAAQGMRRPRAD-EVAEHI 203 Query: 241 PPVAKSSATMITQNHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVI----------GIASP 290 V + T + +++ P FWL+++++ + ++G+ VI G+A Sbjct: 204 KKVKLENTTRESSYSYKPTEMLKKPVFWLLFVMMTMMSTSGLMVISQMGAFAKDFGVADA 263 Query: 291 MLQEVFGGKLLGVNIGFNDLSVEQKTAIAALAAGFTGLISLFNIGGRFAWASCSDFFGRK 350 M VFG L + + + + GL F F W SD GR+ Sbjct: 264 M---VFGMAALPLALTIDRIC--------------NGLTRPF-----FGW--VSDRIGRE 299 Query: 351 MTYAIFFVLGFVLYVSLPWSAKAGNIPLFVGAVCIILSMYGGGFATVPAYLADLFGTQMV 410 T +F G W N LFV ++ +G F+ P+ L D FGT+ Sbjct: 300 NT--MFIAFGLEGVAMTLWLMTTDNPVLFVILSGVVFFGWGEIFSLFPSILTDTFGTKHA 357 Query: 411 GAIHGRLLTAWATAGILGPVVVNYMREYQLSLGMPKSQVYNTTMYILAGMLVLGLICNLL 470 +G L A +LG + M + S + V+ T ++ ++ ++ Sbjct: 358 TTNYGFLYMAQGVGSVLGGPLAALMHDATGSW----TPVFAT---VICMDFATAILAYIV 410 Query: 471 IRPVAAKHFMTPEELAREK 489 ++P+ K EELA Sbjct: 411 LKPMRKKFLAQSEELATSS 429 >gi|134096431|ref|YP_001101506.1| putative oxalate/formate antiporter [Herminiimonas arsenicoxydans] Length = 422 Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 103/426 (24%), Positives = 172/426 (40%), Gaps = 59/426 (13%) Query: 9 EHTVAKPGFNRWL-VPPAALAIHLCIGMAYGFSVFWLPLSKALGVTAPIACGADVGFFAQ 67 + +P RW + +A+ + + YG+++F P++ G + V F Sbjct: 2 SEAINRPASYRWTQLILGIIAMAMIANLQYGWTLFVDPIAAKHGWSR---AAIQVAF--T 56 Query: 68 VFSSSCDWKISMLGWMYTMFFVLLGISAALWGGWLEHAGPRKAGVVAAICWCG-GLLISA 126 +F + W + + GW F GPR +V + CG G I++ Sbjct: 57 IFVLTETWLVPIEGWFVDKF------------------GPRPVVIVGGVL-CGLGWFINS 97 Query: 127 LGVKTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGALVG 186 ++L + VI G+G G Y + V +KWFPDRRG+A G+ GFG G+ V Sbjct: 98 FADSLALLYL----AAVISGIGAGAVYGTCVGNALKWFPDRRGLAAGLTAAGFGAGSAVT 153 Query: 187 TPLADALMKKFASPTSVGVWETFVVMAIIY-FVFMMAGAFGYRVPPTGWKPAGWTPPVAK 245 A++ + G + F+ I + ++ F R P A Sbjct: 154 IIPISAMI------ATRGYQDAFLYFGIGQGIIVVLVALFLSRAPEHKKGDA-------- 199 Query: 246 SSATMITQNHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIGIASPMLQEVFGGKLLGVNI 305 + T+ S+V P FWL++L+ + + G+ + ++ K+ V + Sbjct: 200 VANVQQTKREYKPSEVLREPVFWLMYLMFVMVAAGGLMATAQLGSIARDF---KVFDVQV 256 Query: 306 GFNDLSVEQKTAIAALAAGFTGLISLFNIGGRFAWASCSDFFGRKMTYAIFFVLGFVLYV 365 L++ T A+ GL F F W SD GR+ T I F + V + Sbjct: 257 SMMGLTLPALTFALAIDRVLNGLTRPF-----FGW--VSDQIGREPTMFIAFAIEAVGIL 309 Query: 366 SLPWSAKAGNIPL-FVGAVCIILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTAWATA 424 +L G+ P FV I+ +G ++ P+ AD FG++ A G L TA TA Sbjct: 310 AL---FHYGHNPFAFVILTGIVFFAWGEIYSLFPSTCADTFGSKYATANAGLLYTAKGTA 366 Query: 425 GILGPV 430 +L P+ Sbjct: 367 SLLVPL 372 >gi|134096402|ref|YP_001101477.1| hypothetical protein HEAR3249 [Herminiimonas arsenicoxydans] Length = 439 Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 82/353 (23%), Positives = 143/353 (40%), Gaps = 48/353 (13%) Query: 144 IGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGALVGTPLADALMKKFASPTSV 203 +GG+G+G Y + ++ +KWFPDRRG+A G+ G A ++ A S Sbjct: 116 LGGIGVGSIYATCINNALKWFPDRRGLAVGLTA------GGYGAGSAATILPIAAMIESS 169 Query: 204 GVWETFVVMAIIYFVFMMAGAFGYRVPPTGWKPAGWTPPVAKSSATMITQNHVHVSKVWG 263 G ETF+ ++ A+ R P G PA S + + + Sbjct: 170 GFQETFLFFGLLQGGLAFVAAWFLRSPAKGQVPA--------SQKLLQATRDYTLKEALN 221 Query: 264 IPQFWLVWLVLCLNVSAGIGVIGIASPMLQEVFGGKLLGVNIGFNDLSVEQKTAIAALAA 323 FWL++L+ L V+ G+ + + Q+ +G + V+ + A Sbjct: 222 TKLFWLMFLMFILVVTGGMMAVAQLGVIAQD----------LGVKEFEVDMYFFVMAALP 271 Query: 324 GFTGLISLFNIGGRFAWASCSDFFGRKMTYAIFFVLGFVLYVSL------PWSAKAGNIP 377 L + N R + SD GR+ T I F L ++L PW+ Sbjct: 272 LALMLDRIMNGISRPLFGWISDNIGREKTMVIAFTLEGFGIIALGYFGHNPWA------- 324 Query: 378 LFVGAVCIILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTAWATAGILGPVVVNYMRE 437 F+ ++ +G ++ A D FG++ +G I+G L TA + PV Sbjct: 325 -FLILSGVVFLAWGEVYSLFSALAGDAFGSKHIGKIYGVLYTAKGIGALFVPVG------ 377 Query: 438 YQLSLGMPKSQVYNTTMYILAGM-LVLGLICNLLIRPVAAKHFMTPEELAREK 489 +L M + ++T +Y +A M L ++ + +RP AKH ++L ++ Sbjct: 378 ---NLMMEATGTWSTVLYTVACMDLTAAVLAIVALRPALAKHVKFSKDLLEKE 427 >gi|134095037|ref|YP_001100112.1| hypothetical protein HEAR1832 [Herminiimonas arsenicoxydans] Length = 436 Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 105/445 (23%), Positives = 181/445 (40%), Gaps = 61/445 (13%) Query: 64 FFAQVFSSSCDWKISMLGWMYTMFFVLLGISAALWGGWLEHAGPRKAGVVAAICWCGGLL 123 F ++ W + + +++F V + G ++ GPR V A+C G + Sbjct: 43 LFVTPIDNAHHWGKAAIQLAFSIFIVTETWLVPIEGYLVDKFGPRPVVAVGAVCAGLGWV 102 Query: 124 ISALGVKTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGA 183 +++ ++ + V+ G+G G Y + V +K FPDRRG+A G+ GFG GA Sbjct: 103 LNSYATSLPMLYF----AAVVSGIGAGCVYGTCVGNALKLFPDRRGLAAGLTAAGFGAGA 158 Query: 184 LVGT-PLADALMKKFASPTSVGVWETFVVMAIIYFVFMMAGAFGYRVPPTGWKPAGWTPP 242 + P+A+ + G +TF II V ++ + + P K A Sbjct: 159 AITVIPIANMIQAS-------GYEKTFFTFGIIQGVCILVLSM-LLIKPVAPKSA--LAK 208 Query: 243 VAKSSATMITQNHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIGIASPMLQEVFGGKLLG 302 V S A+ T + S P FW+++++ L S G+ P+ + FG Sbjct: 209 VGSSVASDYTTKQMLKS-----PVFWVLYVMFVLVASGGLMATAQIGPIATD-FG----- 257 Query: 303 VNIGFNDLSVEQKTAIAALAAGFTGLISLFNIGGRFAWASC---SDFFGRKMTYAIFFV- 358 ++ T A T +S+ N+ C SD GR+ T I F+ Sbjct: 258 -------IAALPMTLFGATLPLLTMTLSIDNVANGLTRPLCGFVSDKIGRENTMFIVFIG 310 Query: 359 -----LGFVLYVSLPWSAKAGNIPLFVGAVCIILSMYGGGFATVPAYLADLFGTQMVGAI 413 LG + + P++ F+ ++ +G F+ PA AD+FG++ Sbjct: 311 EGLALLGLMKFGHNPYA--------FMAFAAMVFLCWGEIFSIFPAICADIFGSKFAAGN 362 Query: 414 HGRLLTAWATAGILGPVVVNYMREYQLSLGMPKSQVYNTTMYILAGMLVLGLICNLLIRP 473 G L TA TA +L P+ LS G S+V+ I ++ GL L++ P Sbjct: 363 SGTLYTAKGTAALLVPL------ASVLSAGGGWSRVFVVAAII---TILAGLSAKLILSP 413 Query: 474 VAAKHFMTPEELAREKQLAHEKSAA 498 + + M + ++ L E+ AA Sbjct: 414 M--RKRMMANDAVQDLALEGERVAA 436 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.327 0.141 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,147,859 Number of extensions: 51218 Number of successful extensions: 239 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 226 Number of HSP's successfully gapped: 5 Length of query: 548 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 462 Effective length of database: 716,977 Effective search space: 331243374 Effective search space used: 331243374 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)