BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1315.p
         (328 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096571|ref|YP_001101646.1| LysR family transcriptional reg...    75   4e-15

>gi|134096571|ref|YP_001101646.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 319

 Score = 75.1 bits (183), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 127/299 (42%), Gaps = 22/299 (7%)

Query: 17  ALAALDARLLRLLEALLDEVHLARAAARVGLSLPAAASALERCRQLLRDPLLEDGGLQMR 76
           +   LD  LLR+ +A++ E +L RAA  + ++ PA ++AL R R  L D L+      ++
Sbjct: 2   SFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDALGDELVIRTAHGVK 61

Query: 77  LTATAQALREPLRKLLYDDGAGKDSNTVADQAQPEQGLATLARRVRILMPDYPAQVVAQA 136
            T+ A  L   +R+ L D     ++    D     +   T     R+ M D  A +    
Sbjct: 62  PTSRATELWPVVRRALSD----LETAVTPDTFDVSRATTTF----RMAMADATAALWLPF 113

Query: 137 LYQELSAAAPLLDLEF----------QTWLGEAD-AIARLERGQTELVLGAATPALNLRG 185
           L + +   AP L++                G+ D AI        +L  G  T    +R 
Sbjct: 114 LVRAIEKEAPGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRH 173

Query: 186 REVLQERCVAVMRRDHP-AAHQLTLARWLDYPHLQIACHDTLNRMMDQQVAMQGRRRRIG 244
             +     V VMR++HP A  +LTL  +    HL ++       +MD  ++  GR RRI 
Sbjct: 174 ERLYTGEYVCVMRKNHPLAKEELTLDTYCAAHHLLVSFSGRAKGLMDDALSEVGRERRIL 233

Query: 245 MVIPNFLMAPALLQGSDLIAVMSMHCVPAATAAHPVALTCLRPPLPLEAPPLRLLQHRR 303
           + +  F  A  ++  SDLI V+  H +  A+     AL     P  L    + +L H R
Sbjct: 234 LTVNQFFTAGRVVASSDLITVLPRHLI--ASTGMEEALIAKDLPFSLPEVHVDMLWHER 290


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 537,056
Number of extensions: 19807
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 246
Effective length of database: 730,157
Effective search space: 179618622
Effective search space used: 179618622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)