BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1314.p (304 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 229 2e-61 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 192 2e-50 gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 178 3e-46 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 115 3e-27 gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herm... 109 1e-25 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 229 bits (583), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 115/286 (40%), Positives = 178/286 (62%), Gaps = 1/286 (0%) Query: 7 LEDLRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEDGG 66 + DL F ++ + + A +A+E+G +P +SKR+A +E L VRL +RTTR + +T +G Sbjct: 4 ISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTPEGE 63 Query: 67 NVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKI 126 +++ ++E + + +S +GLLKIS +FG GR+ ++P LS FA +PE+ + Sbjct: 64 IYLADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPEVDV 123 Query: 127 QLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGAPADLAA 186 QL L DR ++LV +G D DIR G + L +++I ++R++CASPAYLK HG P Sbjct: 124 QLHLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNHGIPLTPRD 183 Query: 187 LRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGIILRSIW 246 L++H C+++RE ++ +G W QETVKV G L++N GE WA+DG GI++RS W Sbjct: 184 LQKHNCILLRESDEIYGSWHFSSGTKQETVKVRGSLSANDGECATAWALDGQGIVVRSEW 243 Query: 247 DVADSLKRGRLVRVLPQY-FQEADLCAVYPLQLKNSAKVRECVRFL 291 DVA L+ GRL VL + +AD+ V+P + SAK R V F+ Sbjct: 244 DVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDFM 289 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 192 bits (488), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 104/287 (36%), Positives = 156/287 (54%), Gaps = 1/287 (0%) Query: 7 LEDLRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEDGG 66 L+ + F + HS+FA +A + +P + +RI LE+ LGVRL HR+TR + +TE+G Sbjct: 4 LKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTEEGS 63 Query: 67 NVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKI 126 E RK+L +++Q T+S+ G L IS GR+ V+P F +HP LK+ Sbjct: 64 VYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPGLKM 123 Query: 127 QLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGAPADLAA 186 L DR +DLV EG D+ IR+G +P+ + ++ ++RV+C +P Y KKHG P L Sbjct: 124 SFNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCGTPDYFKKHGKPKTLDD 183 Query: 187 LRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGIILRSIW 246 L +H CL + W +V+ G L N GE++H+W +G GI RS+W Sbjct: 184 LAKHNCLAFNLQGGQQRGWYFNHRGKTVSVRAQGSLDCNDGELLHRWMSEGLGIAWRSVW 243 Query: 247 DVADSLKRGRLVRVLPQY-FQEADLCAVYPLQLKNSAKVRECVRFLQ 292 ++ L+ G L VL + E D+ AVYP Q AKVR + L+ Sbjct: 244 EIQSQLESGTLETVLDDFAIPEYDIMAVYPQQRNVPAKVRLFISHLK 290 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 178 bits (451), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 100/287 (34%), Positives = 163/287 (56%), Gaps = 10/287 (3%) Query: 10 LRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEDGGNVH 69 ++ F V +F + + S A +SK + +LE LG RL +RTTR + +TE G + Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 70 EWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKIQLE 129 E +IL DV++ + + + +PRG LK++ G ++PLL+ + +PE+++ + Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 130 LVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGAPADLAALRQ 189 L DR++DL+ +G DL IRVG E L ++++ + VLCASPAYL+ HGAP L+Q Sbjct: 121 LADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLKQ 180 Query: 190 HQCLVIRERNQSFGI----WRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGIILRSI 245 H CL N S+ W K + V+V G + +N+G+++ A+DG G+I + Sbjct: 181 HACL-----NYSYSSSGDEWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPH 235 Query: 246 WDVADSLKRGRLVRVLP-QYFQEADLCAVYPLQLKNSAKVRECVRFL 291 + VAD ++ GRLV ++ + E + A+YP + SAKVR V +L Sbjct: 236 FIVADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYL 282 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 115 bits (287), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 144/290 (49%), Gaps = 4/290 (1%) Query: 8 EDLRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEDGGN 67 +DL+ F V +A+ +G + + +S+ ++ LE+ L L RTTR + +T++G Sbjct: 6 DDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRL 65 Query: 68 VHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKIQ 127 + AR IL +++ E + ++ P G L+I + + P ++ F + +P++ ++ Sbjct: 66 FLKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLE 125 Query: 128 LELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGAPADLAAL 187 L D+ DL+ D+ IR+G + L ++ + + L ASP YL++HG P L Sbjct: 126 LTSNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPTTPEQL 185 Query: 188 RQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGIILRSIWD 247 HQ L + +S W + G E + V+ L ++ GE + A+ G GI + + Sbjct: 186 AGHQLLGFLQ-FESGNTWPIRHAGG-EGLTVTPALFASSGETLRALALHGQGIASLADYM 243 Query: 248 VADSLKRGRLVRVLPQYFQ--EADLCAVYPLQLKNSAKVRECVRFLQKHL 295 D + GRLVR+L Y+ + AVY + S ++ + FLQ+ L Sbjct: 244 TRDDIAAGRLVRILENYYTGYRQQIHAVYYRNTQLSRRISCFLEFLQQKL 293 >gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 109 bits (273), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 129/256 (50%), Gaps = 2/256 (0%) Query: 7 LEDLRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEDGG 66 +E LR+F V A S+F ++A +G SP +++ I LEQ G LFHR+TR V +T G Sbjct: 5 MELLRIFRVAAESSSFRDAAVRLGTSPQGVTRAIQQLEQHYGEVLFHRSTRQVRITAFGE 64 Query: 67 NVHEWARKILDDVEQMMETVSSAKRVP-RGLLKISTSFGLGRKVVSPLLSRFASEHPELK 125 + + R L+ E + T S ++ G ++I+ LG + V P L R A+ HP++ Sbjct: 65 GLLDQVRPALERFEDLWRTPGSDQQASLSGTVRITAPHSLGTRAVLPALERVAARHPDIT 124 Query: 126 IQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGAPADLA 185 + + L DR + V+EGID+ IRVG + +++ + + A+P +KK G P ++ Sbjct: 125 LDVRLSDRISNTVDEGIDVGIRVGFMRDSRFVARKAADMKLPIVAAPRLIKKVGVPENID 184 Query: 186 ALRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGIILRSI 245 AL V + N W G++ + L +++ ++ A+ G + Sbjct: 185 ALSSLPATVALDINTGRP-WPWHFKAGRQWTPAAPTLVADNADMEMGAALAGIAFAQLAD 243 Query: 246 WDVADSLKRGRLVRVL 261 + A + G+LVRVL Sbjct: 244 YMAAPYIASGKLVRVL 259 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 560,875 Number of extensions: 22493 Number of successful extensions: 93 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 8 Length of query: 304 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 223 Effective length of database: 733,452 Effective search space: 163559796 Effective search space used: 163559796 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)