BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1307.p (302 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096588|ref|YP_001101663.1| putative transcriptional regula... 88 4e-19 gi|134094687|ref|YP_001099762.1| putative DNA-binding transcript... 84 1e-17 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 82 3e-17 gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-... 75 3e-15 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 75 6e-15 >gi|134096588|ref|YP_001101663.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 312 Score = 88.2 bits (217), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/277 (27%), Positives = 125/277 (45%), Gaps = 4/277 (1%) Query: 9 ELQAFIAVARQSSFRAAAEGLFITPPALSRRIENLEQALQERLFDRTTRRVSLTPAGELF 68 +L + +AR+ F AAE ++ PALS + NLE L + R R TP GE Sbjct: 5 QLDYLVTLAREKHFARAAEICCVSQPALSAAVRNLETELGVAIVQRGQRFQGFTPEGERI 64 Query: 69 LVHAQAVMEELELAVKSVEQGMAQRREHVTVACVPSVANNLLPRVLKPYARSHANVRVRI 128 L A+ + LE + + + + +P+ ++ + P HA++R R+ Sbjct: 65 LDWARQTLAALEGMRQEASMSRVKLSGTLRLGAIPTTMP-IVSLLTGPCRAQHADLRQRV 123 Query: 129 IDESAADVLESVRKGEADFGVNFIGAQE-AEIDFQELTRERYLAVMPAQHPLAAHTTLSW 187 + S +++ + E D G+ ++ Q + Q L RERY+ + Q + T +SW Sbjct: 124 LSLSTEEIMRRLDDFELDIGLTYLEDQRLSGFHVQPLYRERYMLLARDQLAMGDRTEISW 183 Query: 188 KLLAGEKLVSLSSSSGNRSLIDNAFSRMPQRPVIQYETNHVAAAVSLV-AAGLGVALLPE 246 + A L L++ NR ++D AF R +P + ET+ V A S V AGL + Sbjct: 184 EDAAELPLCLLTAHMQNRRIVDAAFRRADVQPNVAVETDSVFALYSQVRHAGLFSVVPHS 243 Query: 247 LALRNAPYKGIVARPLTSPVLSRSMGLIMLKGRVLKP 283 L + A PL P LSR++G+I L P Sbjct: 244 LLCLFESRDEMAAIPLV-PELSRAIGMISLAHDPCSP 279 >gi|134094687|ref|YP_001099762.1| putative DNA-binding transcriptional regulatory transcription regulator protein [Herminiimonas arsenicoxydans] Length = 305 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 113/240 (47%), Gaps = 4/240 (1%) Query: 10 LQAFIAVARQSSFRAAAEGLFITPPALSRRIENLEQALQERLFDRTTRRVSLTPAGELFL 69 L F+ VAR S A+ + A S+RI +LE L L R V+LT AG Sbjct: 11 LSLFVDVARTGSITRGAQQANLALAAASKRISDLEAHLGTVLLYRHANGVTLTDAGNACF 70 Query: 70 VHAQAVMEELELAVKSVEQGMAQRREHVTVACVPSVANNLLPRVLKPYARSHANVRVRII 129 HA +++++E + + R V + S LP L + ++HA VR+ I Sbjct: 71 QHALGIIQDVERMSGVMSDYASGIRGQVRIWANTSAITQFLPDDLHAFMQAHAGVRIDIE 130 Query: 130 DESAADVLESVRKGEADFGVNFIGAQEAE-IDFQELTRERYLAVMPAQHPLAAHTTLSWK 188 + ++ DV+ +R+ D G+ F AE I +++ V+P HPLAAH +S Sbjct: 131 ERNSGDVVAGIRENRTDIGI-FADPTPAEGIAVFTYRKQKLGLVVPKNHPLAAHKQVSLS 189 Query: 189 LLAGEKLVSLSSSSGNRSLIDNAFSRMPQRPV-IQYETNHVAAAVSLVAAGLGVALLPEL 247 VSL+ ++ + A SR+ Q+P+ ++ + A +V AG+G+ ++P L Sbjct: 190 DALDYDFVSLAEATSLTERLHAACSRL-QKPLKLRAQVRSFDAVCRMVKAGVGIGVVPFL 248 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 82.0 bits (201), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 80/279 (28%), Positives = 135/279 (48%), Gaps = 29/279 (10%) Query: 3 INIETAELQAFIAVARQSSFRAAAEGLFITPPALSRRIENLEQALQERLFDRTTRRVSLT 62 +NIE +L+ F+ VA + F AA L +T P LS+ I++LE L +LF RT+R V+LT Sbjct: 1 MNIELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALT 60 Query: 63 PAGELFLVHAQAVMEE---LELAVKSVEQGMAQRREHVTVACVPSVANNLLPRVLKPYAR 119 PAG L AQ ++++ L ++ V G + R +++A V + ++LP L+ + Sbjct: 61 PAGSALLPEAQRILQQTAALPDLMRRVTSGASGR---LSLAFVSTADYSVLPPFLREFRE 117 Query: 120 SHANVRVRIIDESAADV-LESVRKGEADFGVNFIGAQEAEIDFQELTRERYLAVMPAQHP 178 S+ V + + E+ DV L+ + +G D G+ I + Q YL V+ P Sbjct: 118 SYPGVEID-LREATTDVQLDDLMQGRIDVGL-LIPPLPDKAKLQ----LDYLPVL--SEP 169 Query: 179 LAAHTTLSWKLLAGEKLVSLSS-------------SSGNRSLIDNAFSRMPQRPVIQYET 225 L K L G++ V+L S + I + + P I E Sbjct: 170 LILAAPKGLKALKGKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEA 229 Query: 226 NHVAAAVSLVAAGLGVALLPELALRNAPYKGIVARPLTS 264 + + LV+AG+G+AL+P+ ++ N G+ +PL + Sbjct: 230 IQMQTIIGLVSAGMGIALVPQ-SVSNLKRPGVDYKPLAN 267 >gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-like protein [Herminiimonas arsenicoxydans] Length = 313 Score = 75.5 bits (184), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 115/253 (45%), Gaps = 10/253 (3%) Query: 15 AVARQSSFRAAAEGLFITPPALSRRIENLEQALQERLFDRTTRRV-SLTPAGELFLVHAQ 73 AV + + AA+ LF + P +S+ I LE+ L +F R +R+ LT G L + Sbjct: 12 AVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLTEPGRAVLKSVE 71 Query: 74 AVMEELELAVKSVEQGMAQRREHVTVACVPSVANNLLPRVLKPYARSHANVRVRIIDESA 133 A+M E+E + + A T+A + A LP+V++ + + VR+ ++ + Sbjct: 72 AIMLEIEGLKRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKFPKVRLSLLQGNP 131 Query: 134 ADVLESVRKGEADFGVNFIGAQEAEIDFQELT-----RERYLAVMPAQHPLAAHTTLSWK 188 + E V +AD + A EA + L + + V+P HPL +++ + Sbjct: 132 KQIAEMVLMDQADLAI----ATEAIANMDGLISLPCYQWEHQIVLPLDHPLLKSKSITLE 187 Query: 189 LLAGEKLVSLSSSSGNRSLIDNAFSRMPQRPVIQYETNHVAAAVSLVAAGLGVALLPELA 248 LA +++ S+ R+ ID+AF+ +P I E + V G+G+ ++ +A Sbjct: 188 ELAAYPIITYDSAFAGRNKIDHAFNLRNLKPDILLEAIDADVIKTYVELGMGIGIIAGMA 247 Query: 249 LRNAPYKGIVARP 261 K + A P Sbjct: 248 FDTERDKNLRAIP 260 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 74.7 bits (182), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 71/297 (23%), Positives = 134/297 (45%), Gaps = 16/297 (5%) Query: 8 AELQAFIAVARQSSFRAAAEGLFITPPALSRRIENLEQALQERLFDRTTRRVSLTPAGEL 67 EL+ +AVAR+ F AAE + P LS I+ LE L LF+R +S+TP G Sbjct: 4 TELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPLGVQ 63 Query: 68 FLVHAQAVMEELELAVKSVEQGMAQRREHVT----VACVPSVANNLLPRVLKPYARSHAN 123 + A+ V+E+ A+K + + Q ++ + + + ++A LLP ++K Sbjct: 64 IVAQAERVLEQTA-AIKEIAK---QNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQ 119 Query: 124 VRVRIIDESAADVLESVRKGEADFGVNFIGAQEAEIDFQELTRERYLAVMPAQHPLAAHT 183 + + + + +LE +R+GE D + + + + Q + E ++ +P HP A + Sbjct: 120 MPLVLQENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQPVYDEPFVVAVPKHHPWAERS 179 Query: 184 TLSWKLLAGEKLVSLSSSSGNRSLIDNA------FSRMPQRPVIQYETNHVAAAVSLVAA 237 +++ L E ++ L + R + FS +E + + +VA+ Sbjct: 180 SVTTDNLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVAS 239 Query: 238 GLGVALLPELALRNAPYKGIVAR--PLTSPVLSRSMGLIMLKGRVLKPAAATLAQAL 292 G+G+ +LP+ ++ + + R P P SR + L+ K A + QAL Sbjct: 240 GIGITVLPQASVPDMHTTDGMLRYIPFVQPGPSRRVVLVWRKSFTRGVAIEEVRQAL 296 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.131 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 414,036 Number of extensions: 13595 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 17 Length of query: 302 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 221 Effective length of database: 733,452 Effective search space: 162092892 Effective search space used: 162092892 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)