BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1304.p (553 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 420 e-118 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 402 e-113 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 397 e-112 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 369 e-103 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 355 2e-99 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust. Identities = 254/513 (49%), Positives = 347/513 (67%), Gaps = 10/513 (1%) Query: 4 NLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLRISE 63 NLK+G RLG+ FGL+L L+A +T + + L + + T ++E+ + LA + I Sbjct: 5 NLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKAT-VLMEEATIKERLAQQWIKGIET 63 Query: 64 NASAMRNLLLLDDHQQ---LTEEVALIAKGEAAIGEDLSRLQARLSSEQGRKSFAEIQAL 120 N + D +Q L +E++ I+ AA+ + L+ + S +G+K A + Sbjct: 64 NTVRTFARVRTSDPEQDKILQQEMSAIS---AAVSKQQDELETLVVSAEGKKLLATVAEK 120 Query: 121 RAAYQQGQQRFLQL-ASTGATMDAAQLLLGSLRQEQDRYIARLKSYIAVGSQMMERSGQQ 179 RA Y + + L + GA + A + ++ D YI +++ + E + + Sbjct: 121 RATYTAIRDDVMNLREARGAELQNA--IANKMKPAADAYIQSVEAVVNAQINNFEDAKGR 178 Query: 180 AADQYHQKTLIMLAMAMLAVAVGGCFAWWATRSVTRPVRHAVEVAQQVADGNLCHQIQAG 239 Y ++++ + ++A+ +G AW TRS+T+P+ +AV VA+ VA G+L +I Sbjct: 179 VDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRITVD 238 Query: 240 ARDEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSSRTEQQAGSLEE 299 ++DE GQLL+AL+ MN SLT + VRSG +TIA AS++IA GNLDLSSRTE+QA SLEE Sbjct: 239 SKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEE 298 Query: 300 TAAAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHGISAASRRIVDI 359 TA++MEELTSTV+QNADNA+QA++LA AS VA + G VV +VV TM GI+ ++R+IVDI Sbjct: 299 TASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDI 358 Query: 360 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKALIDDS 419 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LIDDS Sbjct: 359 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDS 418 Query: 420 VAQVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQVNQAITHMDETT 479 V +VD G +LV +AG+TM EVV SV RV+ I+ EI A+Q+Q GIEQVNQAI MD+ T Sbjct: 419 VDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVT 478 Query: 480 QQNAALVEQAAAAAQSLQDQSQRLRELVGVFRL 512 QQNAALVE+AAAAA+SL +Q+ L + V +F+L Sbjct: 479 QQNAALVEEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 402 bits (1032), Expect = e-113, Method: Compositional matrix adjust. Identities = 258/515 (50%), Positives = 353/515 (68%), Gaps = 7/515 (1%) Query: 2 IANLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLRI 61 IAN+K+G RLGLGFGL+L L+A + A I L ++ +R +V+D A + LL Sbjct: 3 IANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLLGT 62 Query: 62 SENASAMRNLLLL---DDHQQLTEEVALIAKGEAAIGEDLSRLQARLSSEQGRKSFAEIQ 118 S NAS R L L+ D Q + A+ A+ + I E ++ R++S++ ++ FAE+ Sbjct: 63 SVNAS--RTLALVKASDPESQEFFQKAITAQSKQ-ITEIQKSIEDRINSDKEKELFAEVA 119 Query: 119 ALRAAYQQGQQRFLQLASTGATMDAAQLLLGSLRQEQDRYIARLKSYIAVGSQMMERSGQ 178 R+AY ++ L + + G +A Q++ + D Y+ +K+ + ++ + + Sbjct: 120 KKRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEVKLADE 179 Query: 179 QAADQYHQKTLIMLAMAMLAVAVGGCFAWWATRSVTRPVRHAVEVAQQVADGNLCHQIQ- 237 D Y + ++ A++A+ +G AW T +TRP+ A++VA+ VA+G+L + Sbjct: 180 SITDDYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDM 239 Query: 238 AGARDEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSSRTEQQAGSL 297 A +DE G LL AL +M +L R V +R G +TIA ASSEIA GNLDLSSRTEQQA SL Sbjct: 240 AETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSL 299 Query: 298 EETAAAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHGISAASRRIV 357 EETA++MEELTSTV+QNADN++QA++LA AS VA + G VV QVV TM I+ ++++IV Sbjct: 300 EETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIV 359 Query: 358 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKALID 417 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AAKEIK LI Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIG 419 Query: 418 DSVAQVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQVNQAITHMDE 477 DSV +VD G +LV +AG+TM E+V V RV+ I+ EI+ A+Q+Q GIEQVNQA++ MD+ Sbjct: 420 DSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQ 479 Query: 478 TTQQNAALVEQAAAAAQSLQDQSQRLRELVGVFRL 512 TQQNAALVE+AAAAA+SLQDQ++ L E V VFR+ Sbjct: 480 VTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRV 514 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 397 bits (1020), Expect = e-112, Method: Compositional matrix adjust. Identities = 252/523 (48%), Positives = 346/523 (66%), Gaps = 22/523 (4%) Query: 2 IANLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLRI 61 I NLK+G RLGL F +VL L+A + + + L + Q T ++ E + L + Sbjct: 3 ITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQERL---SIQWHA 59 Query: 62 SENASAMRNLLLL-----DDHQQLTEEVALIAKGEAAIGEDLSRLQARLSS----EQGRK 112 +A+A+R + + QQ E+ A ++++LQ +L S E+G+K Sbjct: 60 GNSANAIRTTARIRSTNQEVQQQFQNEMT-------AQSVEITKLQNKLESLIHSEEGKK 112 Query: 113 SFAEIQALRAAYQQGQQRFLQLASTG---ATMDAAQLLLGSLRQEQDRYIARLKSYIAVG 169 + + R Y ++ +L + G A +A +++ + + Y ++ + Sbjct: 113 LMSAVGDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQ 172 Query: 170 SQMMERSGQQAADQYHQKTLIMLAMAMLAVAVGGCFAWWATRSVTRPVRHAVEVAQQVAD 229 + + + Y + +L + +A+A+ AW +RS+TRP+ +AVEVA+ VA Sbjct: 173 QVTFLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAG 232 Query: 230 GNLCHQIQAGARDEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSSR 289 G+L ++I+ + DE GQLL+ALR MN L + V +VR+G ETIA AS++IA GNLDLSSR Sbjct: 233 GDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSR 292 Query: 290 TEQQAGSLEETAAAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHGI 349 TE+QA SLEETA++MEELTSTV+QNADNA+QA++LA AS VA + G VV QVV TM I Sbjct: 293 TEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDI 352 Query: 350 SAASRRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAA 409 ++++++IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA Sbjct: 353 NSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAA 412 Query: 410 KEIKALIDDSVAQVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQVN 469 KEIK LI DSV +VDIG +LV +AG TM+EVV SV RV+ I+ EI A+Q+Q GIEQVN Sbjct: 413 KEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVN 472 Query: 470 QAITHMDETTQQNAALVEQAAAAAQSLQDQSQRLRELVGVFRL 512 QAI MD+ TQQNAALVE+AAAAA+SL +Q+ +L E V VF+L Sbjct: 473 QAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKL 515 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 369 bits (947), Expect = e-103, Method: Compositional matrix adjust. Identities = 242/524 (46%), Positives = 328/524 (62%), Gaps = 24/524 (4%) Query: 1 MIANLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLR 60 M+ N+ + + L G++ LL L + SL T ++ R + EDR + N V+ Sbjct: 1 MLKNITIKSLLLFVMGILSLLLIATGILGLTSLDTTNKALRSVYEDRTVPIGQLNTVI-- 58 Query: 61 ISENASAMRNLLLLDDHQQLTEEVALIAKGEAAIGEDLSRLQARLSSEQGRKSFAEIQAL 120 + + LD + + L+ AI + + + E + L Sbjct: 59 ------TLSTINQLDLAASIYGDPGLVIPKMDAIEKHSKEINQAFDAFMASTLTPEAKVL 112 Query: 121 RAAYQQGQQRFLQLA--------STGATMDAAQLLLGSLRQEQDRYIARLKSYIAVGSQM 172 + ++ FL+ A G + +++ G + + I +++ +A + Sbjct: 113 ADKFAADRKIFLEKALQPAIAASRGGNVLRVTEIVNGPMEE----LITPVRAGVAALIDL 168 Query: 173 MERSGQQAADQYHQKTLIMLAMAMLAVAVG----GCFAWWATRSVTRPVRHAVEVAQQVA 228 R ++A ++ + +++ +++ A+ G G A+W R + RP+ AV++A+ VA Sbjct: 169 ELREAKKAFEESQTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVA 228 Query: 229 DGNLCHQIQAGARDEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSS 288 G+L QI + +E GQLL+AL+ MN SL++ V VR G ETI AS EIA GN DLSS Sbjct: 229 AGDLTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSS 288 Query: 289 RTEQQAGSLEETAAAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHG 348 RTE QAGSLEETA++MEELTSTVRQNADNA+QA++L A+ VA + G VV +VV TM Sbjct: 289 RTEAQAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGS 348 Query: 349 ISAASRRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATA 408 I +SR+IVDIIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA A Sbjct: 349 IKDSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGA 408 Query: 409 AKEIKALIDDSVAQVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQV 468 AKEIKALIDDSV +VD G +LV+QAGSTMQE+V SV V+ I+ EI+ A+Q+Q GIEQV Sbjct: 409 AKEIKALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQV 468 Query: 469 NQAITHMDETTQQNAALVEQAAAAAQSLQDQSQRLRELVGVFRL 512 NQAI+ MDE TQQNAALVEQAAAAAQS+QDQ+ L V +F+L Sbjct: 469 NQAISQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKL 512 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 355 bits (912), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 237/523 (45%), Positives = 323/523 (61%), Gaps = 18/523 (3%) Query: 1 MIANLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLR 60 M+ N+ + RL L + +L A+ I + T + + I ++ P + ++ R Sbjct: 1 MLKNISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTR 60 Query: 61 ISENASAMRNLLLLDDHQQLTEEVALIAKGEAAIGEDLSRLQARLSSE--QGRKSFAEIQ 118 + + A A NL+ + H++ +E + A+ E+ + L E + RK E+ Sbjct: 61 LLQ-ARAGLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEVT 119 Query: 119 ALRAAY-QQGQQRFLQLASTGATMDAAQLLLG-------SLRQEQDRYIARLKSYIAVGS 170 A R Y ++ +Q + G + +L+ SL + D + A G Sbjct: 120 AKRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVELQMKSAATGY 179 Query: 171 QMMERSGQQAADQYHQKTLIMLAMAMLAVAVGGCFAWWATRSVTRPVRHAVEVAQQVADG 230 Q + +H +I + +L + +A++ R++T P++ + +A G Sbjct: 180 Q-------DSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASG 232 Query: 231 NLCHQIQAGARDEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSSRT 290 +L I+ +R+E+G L+ L++M LT V VR G+ I+ A++EIA GNLDLSSRT Sbjct: 233 DLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRT 292 Query: 291 EQQAGSLEETAAAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHGIS 350 EQQA SLEETA++MEELTSTV+QN DNA+QA++LA ASAVA + G VV VV+TM I+ Sbjct: 293 EQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAIN 352 Query: 351 AASRRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAK 410 ++R+IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAK Sbjct: 353 TSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK 412 Query: 411 EIKALIDDSVAQVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQVNQ 470 EIK LIDDSV +VD G RLV +AG+TM EVV SV RV+ I+ EI A+Q+Q GIEQVN Sbjct: 413 EIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNT 472 Query: 471 AITHMDETTQQNAALVEQAAAAAQSLQDQSQRLRELVGVFRLQ 513 AI MDE TQQNAALVEQAAAAA SL+DQ+ L +V VF+LQ Sbjct: 473 AIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQ 515 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.127 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 636,147 Number of extensions: 19309 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 15 Length of query: 553 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 467 Effective length of database: 716,977 Effective search space: 334828259 Effective search space used: 334828259 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)