BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1303.p (361 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr... 167 6e-43 gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas a... 107 1e-24 gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a... 101 7e-23 gi|134096245|ref|YP_001101320.1| porin transmembrane protein [He... 74 8e-15 >gi|134095723|ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 392 Score = 167 bits (424), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 128/371 (34%), Positives = 184/371 (49%), Gaps = 31/371 (8%) Query: 19 AQSSVTIYGSLDAGVAYINNLNGGSVARLDQGTMQPDRIGFRGSEDLGGNLKAVFQLEAG 78 AQ+ VTIYG D + Y +N G S + G + RIGF+G+EDLGG +A+FQLE+G Sbjct: 25 AQNGVTIYGIADVAMVYSSNQGGASNTYMRSGNLAGSRIGFKGTEDLGGGTQAIFQLESG 84 Query: 79 FYTDTGATPNASKLFNRYSTVGLAGD-FGALTLGHMPDVVFDYVGKLSNGFQLTNWYLFH 137 F DTG ++S LFNR + VG+ +GALT G + +VG + LT H Sbjct: 85 FNLDTGEMSSSSTLFNRQAFVGINNTRYGALTAGRQYTPYYLFVGPIGPTNSLTGATGAH 144 Query: 138 PGNLDSLANTYQFDNAVRYTSPTLGGFQGSVMVGFGEVAGDSSNGRNISAGGTYTNGPWR 197 PG++D L T + +N++ YTSP G Q S + GFGE AGD +GR ISA Y W Sbjct: 145 PGDIDGLDTTIRSNNSITYTSPVWNGLQVSALAGFGETAGDMGSGRTISAAIKYDINNWN 204 Query: 198 AALAYSKLNNR-------AAGYAGTFLTSVGLGNAGTVFNSLTTTAGGLGYTIGSVRLNT 250 AL Y +LNN + + F TS + N +S AG YT+G V + Sbjct: 205 FALGYQRLNNSNNPGGVWSPNASANFNTSP-VNNGYLSADSAQYLAGAARYTMGKVIVGA 263 Query: 251 AYTQVKLALPSGATPKQK----NLDLGAAWRYATLDTINLGYGFSKLQG-------ARWN 299 ++V+ + QK L L ++ + +++GY ++K + A+++ Sbjct: 264 NASRVEYRPNGNSLFTQKATFDTLGLLTGYQMTPVFFVSVGYSYTKEKAANGISDPAKYH 323 Query: 300 TLSLSHVHEFSKRTQWYVQAAYQRAGGDARFAVMNGTGASGATGVSG---------GRGQ 350 L+L + FSKRT Y AYQ A G+ + G+G A V G G Q Sbjct: 324 QLALEQTYSFSKRTAIYFLEAYQVAKGNT--LGLGGSGPVRAVAVVGDSQNGTPSDGANQ 381 Query: 351 MVTTIGMHHSF 361 V +G+ HSF Sbjct: 382 AVFMVGIRHSF 392 >gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas arsenicoxydans] Length = 363 Score = 107 bits (266), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 98/319 (30%), Positives = 148/319 (46%), Gaps = 39/319 (12%) Query: 19 AQSSVTIYGSLDAGVAYINNL--NGGSVARL-DQGTMQPDRIGFRGSEDLGGNLKAVFQL 75 A SS+++YG++D+G+ ++ N +GGS +L G +R+G +G E+LGG L F L Sbjct: 30 APSSISMYGTIDSGIRHVTNTTASGGSTTKLGSNGEYYNNRLGIKGMENLGGGLNMHFHL 89 Query: 76 EAGFYTDTGATPN-ASKLFNRYSTVGLAGDFGALTLGHMPDVVFDYVGKLSNGFQLTNWY 134 E+GF T TG N A++LFNR S++G+AG FG+L G P V V FQ + Sbjct: 90 ESGFNTGTGELDNKANRLFNRISSIGIAGSFGSLDFGRQPSVACKAVYAYEP-FQYRYVH 148 Query: 135 LFH-----PGNLD-------SLANTYQFDNAVRYTSPTLGGFQGSVMVGFGEVAGDSSNG 182 + GNLD + +F N +Y G F S GEV G + N Sbjct: 149 IIPLAGAVAGNLDGRVSRPFGTVDGPRFSNGAQYFG-KFGSFTASAEYIMGEVPGSNRNQ 207 Query: 183 RNISAGGTYTNGPWRAALAYSKLNNRAAGYAGTFLTSVGLGNAGTVFNSLTTTAGGLGYT 242 + G Y +G + AY++ N ++G A TT GG GY Sbjct: 208 AAKAVGLVYNDGTFTVGGAYTRQN-----------PNIGTVAASDYREQNQTTFGG-GYK 255 Query: 243 IGSVRLNTAYTQVKLALPSGATPKQKNLDLGAAWRYATLDTINLGYGFSKLQG-----AR 297 I ++R+ Y + A+ T + KN+ LGA + + ++ GY + L+ AR Sbjct: 256 IDALRITGGYLKTTTAI----TSQAKNIWLGARYDFTPAASLTAGYYRTTLETAQSEIAR 311 Query: 298 WNTLSLSHVHEFSKRTQWY 316 N L + + S RT Y Sbjct: 312 RNLLIVGATYALSPRTSLY 330 >gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas arsenicoxydans] Length = 357 Score = 101 bits (251), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 104/340 (30%), Positives = 153/340 (45%), Gaps = 41/340 (12%) Query: 1 MKKLMMAAAA-SCLSASALAQSSVTIYGSLDAGVAYINNLNGGSVARLD---QGTMQPDR 56 MKK ++A A + +A AQSSVT+YG +D G+ + G+ RL+ G R Sbjct: 1 MKKSLLALAVLGAFAGAASAQSSVTVYGIVDMGITS-QDTGAGANDRLNGVTSGNQSASR 59 Query: 57 IGFRGSEDLGGNLKAVFQLEAGFYTDTG--ATPNASKLFNRYSTVGLAGDFGALTLGHMP 114 IGF+G+EDLG LKA F LE DTG + + FNR++TVGL+G+FGA+ LG Sbjct: 60 IGFKGTEDLGNGLKANFVLEQTIAADTGVLSQVDGKTAFNRFATVGLSGNFGAVNLGRQV 119 Query: 115 DVV---FDYVGKLSNGFQLTNWY-LFHPGNLDSLANTYQFDNAVRYTSPTLGGFQGSVMV 170 + +D + +G + +F L + + N+++YTS + GF+ Sbjct: 120 SAIKDAYDAIDPFGDGGTIAPISAIFFNAALK--GDNGRISNSIKYTSNSYSGFKFGAHY 177 Query: 171 GFGEVAG----DSSNGRNISAGGTYTNGPWRAALAYSKLNNRAAGYAGTFLTSVGLGNAG 226 FGE AG DS+ G N+ Y NGP Y ++ AG G Sbjct: 178 AFGEQAGRTGADSNYGLNLG----YANGPLNVQFGYMSGDDSTAGAPGF----------K 223 Query: 227 TVFNSLTT-TAGGLGYTIGSVRLNTAYTQVKLALPSGATP-KQKNLDLGAAWRYATLDTI 284 V NS T G Y G +L+ AY K +G K +N LG + + +I Sbjct: 224 PVKNSKDKMTFLGATYDFGVAKLHAAYGDSKNQPVAGNVDNKYRNYMLGVSAKVGAAGSI 283 Query: 285 NLGYGFSKLQ---GARWNTLS-----LSHVHEFSKRTQWY 316 Y + + G + N + + H+ SKRT Y Sbjct: 284 MASYTVNDTRTFGGVKANDRDSKRAGIMYAHDLSKRTNLY 323 >gi|134096245|ref|YP_001101320.1| porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 394 Score = 74.3 bits (181), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 120/260 (46%), Gaps = 32/260 (12%) Query: 13 LSASALAQSSVTIYGSLDAGVAYINNL-NGGSVARLDQGTMQPDRIGFRGSEDLGGNLKA 71 S +ALAQSSV G++DA + N + GS + ++ M+ G +G+E+LGG L+A Sbjct: 22 FSLNALAQSSVQFVGTVDAFAGSLKNSGDAGSKSVVNSSGMETSWWGVKGTENLGGGLQA 81 Query: 72 VFQLEAGFYTDTGATP--NASKLFNRYSTVGLAGDFGALTLGHMPDVVFDYVGKLSNGFQ 129 F L + F DTGA ++ +F+R + VGL+G FG +++G D+ +++ L+ Sbjct: 82 QFALSSFFRPDTGAQGRFDSDTMFSRDAHVGLSGSFGRVSVGR--DLAPNFIPTLTFS-P 138 Query: 130 LTNWYLFHPGNL---------------DSLANTYQFDNAVRYTSPTLGGFQGSVMVGFGE 174 + F P L ++A + N + Y P LGGF S+ FGE Sbjct: 139 FGGSFAFSPLELHTQTPSGSYRGQVWSPTVAGDTGWSNEIMYVMPKLGGFTTSLFFQFGE 198 Query: 175 VAGDSSNGRNISAGGTYTNGP--WRAALAYSKLNNRAAGYAGTFLTSVGLGNAGTVFNSL 232 AG N A Y GP + A K+NN L SV G++ + Sbjct: 199 QAGKPGK-NNYGANTMYEQGPLSFGAYFQSVKVNNP--------LDSVTSGDSRVFTFTP 249 Query: 233 TTTAGGLGYTIGSVRLNTAY 252 A G YT+ + R +T + Sbjct: 250 YNQATGATYTLAASRNDTWF 269 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.133 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 672,600 Number of extensions: 29377 Number of successful extensions: 110 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 4 Length of query: 361 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 278 Effective length of database: 726,862 Effective search space: 202067636 Effective search space used: 202067636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)