BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1302.p
         (315 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093902|ref|YP_001098977.1| putative flavohemoprotein [Herm...    60   1e-10

>gi|134093902|ref|YP_001098977.1| putative flavohemoprotein
           [Herminiimonas arsenicoxydans]
          Length = 397

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 109/248 (43%), Gaps = 35/248 (14%)

Query: 5   LLSVRVQAMRFEAQGVISVELGLPEEGELPPFEAGAHIDL--HLGNGL--VRSYSLSNSP 60
           L ++RV A+  E+  V S  + +  + +LP F+ G ++ +   L +GL  +R YSLS SP
Sbjct: 151 LFNMRVVAVEKESAQVTSYSM-VAVDRQLPEFQPGQYVSVAVFLPDGLRQLRQYSLSESP 209

Query: 61  TERH------RYVVGVLHDRSSRGGSRYVHEQLRVGATLSISAPRNHF-PLEEAAPLSVL 113
             +H      R V G   +  +   S ++H+ + VG+ L +S P   F P  +     VL
Sbjct: 210 DHQHLRISVKREVAGA--ETPAGVVSNWLHDNVVVGSILPVSMPAGDFTPDTDGEDPIVL 267

Query: 114 IAGGIGITP-ISCMYHHLRAQGKEVVLH-----YCARSRREAAFTRQLLGQPGVSS---- 163
           ++ G+GITP IS +    +   +  V+              A   + +   P + S    
Sbjct: 268 LSAGVGITPMISALNRIAKVSPRRRVIFAHAARNAHHHPHRADIAKAVASMPNLHSVTFY 327

Query: 164 ---HFDDEAGCAPDLRAVLSAYPQ----QAHFYCCGPTPMLNA--FESLCEELDLPHVHI 214
                DDE   A   R  L   PQ    ++  Y CGP P + A   + L + +   H+H 
Sbjct: 328 EEAEHDDETSLAG--RMELQKLPQWDVKKSQVYMCGPLPFMQAQWADLLAQGVPAQHLHR 385

Query: 215 ERFAADKL 222
           E F  D L
Sbjct: 386 EVFGPDML 393


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 553,632
Number of extensions: 21632
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 233
Effective length of database: 730,157
Effective search space: 170126581
Effective search space used: 170126581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)