BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1301.p
         (349 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093704|ref|YP_001098779.1| nitrite reductase small subunit...    55   4e-09

>gi|134093704|ref|YP_001098779.1| nitrite reductase small subunit
           [Herminiimonas arsenicoxydans]
          Length = 117

 Score = 55.5 bits (132), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 20  LKDLWYPICPSEFVAEKPVSLRRLGKK-----FVFWREPSGQLHALEDHCPHRGAPLSMG 74
           + + W  IC    V + PV   R+ K+        +R    ++ AL D CPH+G PLS G
Sbjct: 1   MSNQWKVICK---VTDIPVLGSRVVKRADQPNIAIFRNSEDKVFALLDRCPHKGGPLSQG 57

Query: 75  IPMGDRIACGYHGVQVRFDGVVTSVPGSPGCKLEGAKATRRFHVTEAAGAIFL 127
           I  G+R+AC  H   +  D    + P   GC       T++F V   +G ++L
Sbjct: 58  IVFGERVACPLHNWSIGLDSGCAAAPDE-GC-------TQKFSVKIESGEVWL 102


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 624,004
Number of extensions: 26074
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 266
Effective length of database: 726,862
Effective search space: 193345292
Effective search space used: 193345292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)