BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1295.p (571 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094465|ref|YP_001099540.1| acetolactate synthase III large... 126 2e-30 gi|134093610|ref|YP_001098685.1| glyoxylate carboligase [Hermini... 108 5e-25 gi|134093631|ref|YP_001098706.1| putative oxalyl-CoA decarboxyla... 63 5e-11 >gi|134094465|ref|YP_001099540.1| acetolactate synthase III large subunit [Herminiimonas arsenicoxydans] Length = 579 Score = 126 bits (317), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 135/546 (24%), Positives = 231/546 (42%), Gaps = 39/546 (7%) Query: 12 TNPQVTVGCAIAAFLEQCGVKAAFGVISIHNMPILDAFGERGKIRFIPARGEAGGANMAD 71 T ++ V C L + GV+ FG + I DA + K + I R E + AD Sbjct: 14 TGAEIVVRC-----LAEEGVEHVFGYPGGAVLYIYDAIYNQDKFQHILVRHEQAAVHAAD 68 Query: 72 AYARTTGGLGVCLTSTGTAAGNAAGAMVEALTAGTPLLHLTGQIETPYLDQSLAYIHEAP 131 AY+R++ +GV + ++G NA + A P++ ++GQ+ T + L E Sbjct: 69 AYSRSSKKVGVSIVTSGPGVTNAVTGLATAYMDSIPMVIISGQVPTHGI--GLDAFQEC- 125 Query: 132 DQLSMLKAISKAAFRIRSVETAISTIKLAVQTALTPPMGPVSVEIPIDI--QAAMISMPT 189 D + + + K F ++ V +T+K A A T GPV V+IP D+ M S P Sbjct: 126 DTVGITRPCVKHNFLVKDVRDLAATMKKAFYIATTGRPGPVLVDIPKDVSMHKCMFSYPK 185 Query: 190 NLQPLAIPP-SLPSARALDELAERLLKARRPLLWLGGGA--RHAGPQVQRLL-ALGFGVV 245 ++ + P + + + LL+A RP+++ GGG +A ++ +L+ LGF Sbjct: 186 EVEMRSYKPVDKGHTGQIRKAVQLLLQAERPMIYTGGGVILANASEELTQLVDKLGFPCT 245 Query: 246 TSTQGRGIVPEDDARSLGAFNLHKPVE-NF-YQSCDAMLVVGSRLR----GNETLKYELK 299 + G G + +G +H E N Q D M+ +G+R GN K+ Sbjct: 246 NTLMGLGSYRASSDKFVGMPGMHGTYEANMAMQHSDVMIAIGARFDDRVIGNP--KHFSS 303 Query: 300 LPRPLYRVDADPAAEGRCYTSDYFVCGDSALVLGGLADRLAALQVDP---AFMADLKQAR 356 PR + +D DP++ + D + G+ VL L +L A + P A KQ Sbjct: 304 NPRKIIHIDIDPSSISKRVKVDIPIVGNVKEVLVELLAQLDAAEAKPNSVALSNWWKQIN 363 Query: 357 ESAVHGLLDG------LGPYGTLVEQLQQAAGRQFNWVRDVTVSNSTWGNRYLRIFDPRA 410 E L + P + + G F V + W +Y PR Sbjct: 364 EWRKRDCLKFENSTTVIKPQSVIQKVWDVTKGDAF--VTSDVGQHQMWAAQYYPFDKPRR 421 Query: 411 GVHALGGGIGQGLAMGIGAAIGAAVTQSGKKTFTLAGDGGFILNLGELATAVQEQADMVI 470 +++ GG+G + +G+ A+G + + G+ + + ELAT Q I Sbjct: 422 WINS--GGLGT-MGVGLPYAMGVQMANPDATVACITGEASIQMCIQELATCKQYHLTPKI 478 Query: 471 VLMNDQGYGVIKNIQDAQYGGR--RHYVDLHTPDYAALSAALKLRHKRVGDLSQVAAGLD 528 +L+N++ G+++ Q +YG R Y+D PD+ L A + + + V L Sbjct: 479 ILLNNRFLGMVRQWQQLEYGSRYSESYMD-SLPDFDKLVEAYGHVGMTIENPADVDGALK 537 Query: 529 EALSQQ 534 EA + + Sbjct: 538 EAFAMK 543 >gi|134093610|ref|YP_001098685.1| glyoxylate carboligase [Herminiimonas arsenicoxydans] Length = 582 Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 115/488 (23%), Positives = 206/488 (42%), Gaps = 24/488 (4%) Query: 15 QVTVGCAIAAFLEQCGVKAAFGVISIHNMPILDAFGERGKIRFIPARGEAGGANMADAYA 74 ++T A +++ G+ AFGV P A ++G I+ I AR G +MA+ Y Sbjct: 3 KMTAAQAAVWVMQKEGIDQAFGVPGAAINPFYSAMQKQGTIKHILARHVEGATHMAEGYT 62 Query: 75 R-TTGGLGVCLTSTGTAAGNAAGAMVEALTAGTPLLHLTGQIETPYLDQSLAYIHEAPDQ 133 R G +GV L ++G + + A+ P+L +TGQ L + +A D Sbjct: 63 RAKAGNIGVALATSGPGGTDMITGLYSAIADSIPILCVTGQAPRARLHKE---DFQAVDI 119 Query: 134 LSMLKAISKAAFRIRSVETAISTIKLAVQTALTPPMGPVSVEIPIDIQAAMISMPTNL-Q 192 S+ K ++K + +R + A + GPV +++P D+Q A I +L + Sbjct: 120 ESISKPVTKWSVMVREPALVPQVFQQAFHIMRSGRPGPVLIDLPFDVQVAEIEFDPDLYE 179 Query: 193 PLAIPPSLPSARALDELAERLLKARRPLLWLGGGA--RHAGPQVQRLLAL-GFGVVTSTQ 249 PL + S + ++ L +A RPLL GGG A +Q L VV + Sbjct: 180 PLPVYKPAASRKQIERAISMLNEAERPLLISGGGVINSDASALMQEFAELVNVPVVPTLM 239 Query: 250 GRGIVPEDDARSLGAFNL---HKPVENFYQSCDAMLVVGSRLRGNETLKYEL-KLPRPLY 305 G G VP+D +G L H+ + D +G+R T ++ R Sbjct: 240 GWGTVPDDHPLMVGMVGLQTSHRYGNATMLASDFAFGIGNRWANRFTGSIDVFTKDRKFV 299 Query: 306 RVDADPAAEGRCYTSDYFVCGDSALVLG---GLADRLAA---LQVDPAFMADLKQARESA 359 +D +P GR + D + D+ L +A L A L+ A++A+ ++ + + Sbjct: 300 HIDIEPTQIGRVFGPDLGITSDAGAALKLMIEVAKELKAAGKLKNRDAWLAECQERKRTM 359 Query: 360 VHGLLDGLGPYG--TLVEQLQQAAGRQFNWVRDVTVSNSTWGNRYLRIFDPRAGVHALGG 417 + + P + +++ + G+ +V ++ +S G ++L ++ R ++ Sbjct: 360 LRKTDFDVTPIKPQRVYQEMNEVFGKTARYVSNIGLSQIAAG-QFLHVYKERNWINC--- 415 Query: 418 GIGQGLAMGIGAAIGAAVTQSGKKTFTLAGDGGFILNLGELATAVQEQADMVIVLMNDQG 477 G L + AA+G + + GD F + ELA Q + VL+N+ Sbjct: 416 GQAGPLGWSVPAALGVRAADPTSEIVAITGDYDFQFLIEELAAGAQFNLPYIHVLVNNSY 475 Query: 478 YGVIKNIQ 485 G+I+ Q Sbjct: 476 LGLIRQAQ 483 >gi|134093631|ref|YP_001098706.1| putative oxalyl-CoA decarboxylase [Herminiimonas arsenicoxydans] Length = 570 Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 7/210 (3%) Query: 26 LEQCGVKAAFGVISIHNMPILDAFGERGKIRFIPARGEAGGANMADAYARTTGGLGVCLT 85 LE G+ +G++ I I + RG +F R E A T G+C+T Sbjct: 25 LEMNGITNIYGLLGIPVTEIGRMWQARGN-KFFSFRNEQNAGYAASVAGYLTKKPGICVT 83 Query: 86 STGTAAGNAAGAMVEALTAGTPLLHLTGQIETPYLDQSLAYIHEAPDQLSMLKAISKAAF 145 + N A+ A T P++ ++G E +D +E DQL++ + KA+F Sbjct: 84 VSAPGFLNGLTALANATTNCFPMILISGSSEREVVDLQQGD-YEEMDQLNIARPHCKASF 142 Query: 146 RIRSVETAISTIKLAVQTALTPPMGPVSVEIPIDIQAAMISMPTNLQPLAI-----PPSL 200 RI E + A++TAL+ G V ++IP + + +S + L + P + Sbjct: 143 RINRTEDIGVAVVRAIRTALSGRPGGVYLDIPARLFSTTMSAEEGKKSLFVPVDPAPAQI 202 Query: 201 PSARALDELAERLLKARRPLLWLGGGARHA 230 P A+ + A++PL+ LG GA +A Sbjct: 203 PGPDAVARAVALIKGAKKPLILLGKGAAYA 232 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 995,996 Number of extensions: 38419 Number of successful extensions: 133 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 3 Length of query: 571 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 484 Effective length of database: 713,682 Effective search space: 345422088 Effective search space used: 345422088 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)