BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1294.p (274 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 98 4e-22 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 79 2e-16 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 74 6e-15 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 72 3e-14 gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei... 71 6e-14 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 98.2 bits (243), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 87/270 (32%), Positives = 133/270 (49%), Gaps = 26/270 (9%) Query: 1 MAMTSLQGKVAVVTGGSSGIGLASVELLLEAGAAVAFCGRDSARLKEAEAALRQRYPRAS 60 M L G+VA+VTG S GIG A + L + G V G ++ E+ AA Y S Sbjct: 1 MTTVELAGQVALVTGASRGIGRAIAQALAKQG--VKVIGTATS---ESGAAAISEYLAES 55 Query: 61 LYSAPCDVLAQQQVQAFANAVENTLGPVSILVNNAGQGRVSTFADTSDDAWSEELHLKFF 120 DV + A + ++ G V+ILVNNAG + D+ W + Sbjct: 56 GKGVVLDVNDAARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLT 115 Query: 121 SVIYPTRAFLPQLQAMSARHGDAAIVCVNSLLATQPEPHMVATSAARAGVHNLVRSLATE 180 SV +RA L + M A+HG I+ + S++ + + +AA+AGV + R+LA E Sbjct: 116 SVGRLSRAVLRGM--MKAKHGR--IINITSVVGSTGNAGQMNYAAAKAGVAGMSRALARE 171 Query: 181 LATGPRACVRVNGILIGLVESGQWRRRYAARDEALQDQTWAQWSAALAEKKHIQLGRLGL 240 + G R + VN + G +++ + L +Q Q SA L + + LGRLG+ Sbjct: 172 I--GSR-NITVNCVAPGFIDTDMTK--------TLSEQ---QISALL---QQVPLGRLGV 214 Query: 241 PREAAQAIVFLASPLSSYTTGSHIDVSGGL 270 P + A A+ FLASP +SY TG+ + V+GG+ Sbjct: 215 PEDIAAAVSFLASPQASYITGTTLHVNGGM 244 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 79.0 bits (193), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 112/261 (42%), Gaps = 21/261 (8%) Query: 9 KVAVVTGGSSGIGLASVELLLEAGAAVAFCGRDSARLKEAEAALRQRYPRASLYSAPCDV 68 ++A+VTGG G+G A L G V + E + + PCDV Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTT-YSPSNTTAGEWLATMKASGYDFRAYPCDV 61 Query: 69 LAQQQVQAFANAVENTLGPVSILVNNAGQGRVSTFADTSDDAWSEELHLKFFSVIYPTRA 128 Q ++ +G + +LVNNAG R TF W + SV T+ Sbjct: 62 SDYDSAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMTK- 120 Query: 129 FLPQLQAMSARHGDAAIVCVNSLLATQPEPHMVATSAARAGVHNLVRSLATELATGPRAC 188 P M R G I+ ++S+ A + SAA+AG+H ++LA E+A R Sbjct: 121 --PVCDGMVER-GWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVA---RKA 174 Query: 189 VRVNGILIGLVESGQWRRRYAARDEALQDQTWAQWSAALAEKKHIQLGRLGLPREAAQAI 248 V VN I G + + + A + L + Q I +GRLG P E A + Sbjct: 175 VTVNTISPGYIGT---KMVTAIPQDVLDTKIVPQ----------IPMGRLGKPEEVAGLV 221 Query: 249 VFLASPLSSYTTGSHIDVSGG 269 +LAS +++ TG++I ++GG Sbjct: 222 AYLASDEAAFVTGANIAINGG 242 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 74.3 bits (181), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 80/272 (29%), Positives = 114/272 (41%), Gaps = 15/272 (5%) Query: 1 MAMTSLQGKVAVVTGGSSGIGLASVELLLEAGAAVAFCG-RDSARLKEAEAALRQRYPRA 59 M T+LQGK A++TG +SGIGL L + GA + G D+ + +A L Q Y Sbjct: 1 MQNTTLQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDYGVQ 60 Query: 60 SLYSAPCDVLAQQQVQAFANAVENTLGPVSILVNNAGQGRVSTFADTSDDAWSEELHLKF 119 S Y P D+ Q++ A G V ILVNNAG V+ D + W + + Sbjct: 61 STYH-PADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAINL 119 Query: 120 FSVIYPTRAFLPQLQAMSARHGDAAIVCVNSLLATQPEPHMVATSAARAGVHNLVRSLAT 179 S + TR LP AM ++ I+ + S A AA+ G+ L + A Sbjct: 120 SSAFHTTRLALP---AMKEKNW-GRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTAL 175 Query: 180 ELATGPRACVRV--NGILIGLVESGQWRRRYAARDEALQDQTWAQWSAALAEKKHIQLGR 237 E A C + +L LV+ Q R A D + D LAEK+ G Sbjct: 176 ENAQTGVTCNAICPGWVLTPLVQK-QVDVRAANEDVSNDDAK----KGLLAEKQ--PSGE 228 Query: 238 LGLPREAAQAIVFLASPLSSYTTGSHIDVSGG 269 P + VFL S ++ G+ + GG Sbjct: 229 FVTPEQLGALAVFLCSEAANQVRGAAWSMDGG 260 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 72.4 bits (176), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 115/261 (44%), Gaps = 27/261 (10%) Query: 9 KVAVVTGGSSGIGLASVELLLEAGAAVAFCGRDSARLKEAEAALRQRYPRASLYSAPCDV 68 K A+V+GG+ G+G A L AG AVA +A + A R+ S+ DV Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVTYHHNA---DTAAEFRKN---TSIPVFCWDV 56 Query: 69 LAQQQVQAFANAVENTLGPVSILVNNAGQGRVSTFADTSDDAWSEELHLKFFSVIYPTRA 128 Q Q VE +GP+ ILVNNAG R + + W E ++ SV +R Sbjct: 57 SDYAQCQEGIRQVELDVGPIDILVNNAGITRDAVLHHMTPGQWIEVINTNLGSVFNMSRN 116 Query: 129 FLPQLQAMSARHGDAAIVCVNSLLATQPEPHMVATSAARAGVHNLVRSLATELATGPRAC 188 + + M R+ I+ ++S+ + + +AA+AG+ +SLA E A R Sbjct: 117 VI---EGMRERN-FGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESA---RKN 169 Query: 189 VRVNGILIGLVESGQWRRRYAARDEALQDQTWAQWSAALAEKKHIQLGRLGLPREAAQAI 248 + VN I G ++ A E L+ I +G LG + A+ + Sbjct: 170 ITVNAIAPGYCDTDMVS---AIPQEVLEKIVTG-----------IPVGHLGTGSDIARLV 215 Query: 249 VFLASPLSSYTTGSHIDVSGG 269 VFLA S + TG+ DV+GG Sbjct: 216 VFLADNASGFITGATFDVNGG 236 >gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Herminiimonas arsenicoxydans] Length = 239 Score = 70.9 bits (172), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 31/213 (14%) Query: 63 SAPCDVLAQQQVQAFANAVENTL--GPVSILVNNAGQGRVSTFADTSDDAWSEELHLK-- 118 SA V +A A+E L GPV +LVNNAG + F + W + + Sbjct: 52 SAEVAVFDITDAEATKVALETLLEAGPVQVLVNNAGIHSDAVFPGMTSAQWHSVIDVSLH 111 Query: 119 -FFSVIYPTRAFLPQLQAMSARHGDAAIVCVNSLLATQPEPHMVATSAARAGVHNLVRSL 177 FF+V P +P ++ R I+ V+S+ A V SAA+ +H+ +SL Sbjct: 112 GFFNVTQPLT--MPMIRTRWGR-----IINVSSIAAVTGNRGQVNYSAAKGALHSATKSL 164 Query: 178 ATELATGPRACVRVNGILIGLVESGQWRRRYAARDEALQDQTWAQWSAALAEKKHIQLGR 237 A ELA+ + VN + G++ +G + D+A+Q+ + + R Sbjct: 165 ALELAS---RGITVNAVAPGIIATGMIEEAF--DDKAIQNI--------------VPMKR 205 Query: 238 LGLPREAAQAIVFLASPLSSYTTGSHIDVSGGL 270 G P E A I FLASP ++Y +G I ++GG+ Sbjct: 206 AGKPEEVADLIGFLASPNAAYISGQIISINGGM 238 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.129 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 457,351 Number of extensions: 16034 Number of successful extensions: 88 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 83 Number of HSP's successfully gapped: 8 Length of query: 274 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 194 Effective length of database: 736,747 Effective search space: 142928918 Effective search space used: 142928918 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)