BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1293.p
         (272 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094060|ref|YP_001099135.1| IclR family transcriptional reg...    70   1e-13
gi|134095851|ref|YP_001100926.1| putative transcriptional regula...    58   6e-10

>gi|134094060|ref|YP_001099135.1| IclR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 245

 Score = 70.5 bits (171), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 2/222 (0%)

Query: 32  LSAPELARRLDIPRSTVFRLLATLERMGFVERADGGRDYRLGMSVLRLGFEYLASLELTE 91
           +S  EL+R   +  ST  R+L  L    FV+R++ G  YRLGM +L LG    + L + E
Sbjct: 15  VSLKELSRVTGLHPSTAHRILNDLVLKRFVDRSEPGA-YRLGMRLLELGNIVKSRLSVRE 73

Query: 92  IGRPLLDRLRDEIGYSCNLVVRDGRSIVYVAKSVTQTAFTSHVN-VGTRLPAHATVLGRV 150
               L+  L  +   + NL VR    I+Y+ ++ ++ +    V  +G R P H T  G++
Sbjct: 74  AALDLMRHLHRKTNQTVNLSVRQNDEIIYIDRAFSERSGMQVVRAIGGRAPLHLTSTGKL 133

Query: 151 LLEDLSLPQLRALYPEQHLEVFSSNTPKTVVELFDMVQADKERGFVLQEGFFETSISTVA 210
            L       ++A     HL   + N+   +  L + +   +  G+       E  +  +A
Sbjct: 134 FLSIDEPKMVQAYAIRTHLVGHNKNSITDLNRLENELSLVRAHGYARDNEELELGVRCMA 193

Query: 211 APVRDHSGLVVAALGATIPSPHIDASQLDVIVARVRETAAEL 252
           A + D +G ++A L  + P+  +    L+ ++   RE +  L
Sbjct: 194 AGIHDDTGKLIAGLSISAPADRLQEEWLEDLMRTAREISVAL 235


>gi|134095851|ref|YP_001100926.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 285

 Score = 57.8 bits (138), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 21/237 (8%)

Query: 3   EEESQDKYSVPGLERGLRLLCEF-SRQDKTLSAPELARRLDIPRSTVFRLLATLERMGFV 61
           ++ES+       +ER  R+L E  S     L   +LAR+L++ R+T+ R+L  L R G V
Sbjct: 8   QKESESISGTQSIERAARILREIASYSAHGLRLVDLARQLNLKRTTIHRILMCLIREGLV 67

Query: 62  ERADGGRDYRLGMSVLRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVR---DGRSI 118
            +      Y LG S+  LG    +  +L EI  P L+R+  + G++  + +R   D  SI
Sbjct: 68  MQHPTTLRYMLGYSLFELGLTAASQFKLREICEPCLERIAKKTGHTAFMTIRSELDAISI 127

Query: 119 VYVAKSVTQTAFTSHVNVGTRLPAHATVLGRVLLEDLSLPQLRALYPEQHLE-VFSSNTP 177
                  T+      + +G   P         +L  L         P+  +E + S+N  
Sbjct: 128 ARADPDPTKPMDEPAIELGVHRPLGVGAGSLAILISL---------PDDEIERIVSANAR 178

Query: 178 K-------TVVELFDMVQADKERGFVLQEGFFETSISTVAAPVRDHSGLVVAALGAT 227
           +       TV  L  + +  +E G+   +      +S V   VR+  G  + A+  T
Sbjct: 179 RLGPYGKLTVPLLLQLAREAQETGYSSHDSRMLDGLSGVGILVRNSEGAPLGAISIT 235


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 494,337
Number of extensions: 19607
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 192
Effective length of database: 736,747
Effective search space: 141455424
Effective search space used: 141455424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)