BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1290.p (256 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 122 2e-29 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 102 3e-23 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 91 6e-20 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 87 6e-19 gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herm... 79 2e-16 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 122 bits (305), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 133/252 (52%), Gaps = 7/252 (2%) Query: 6 TATLLAGRRILVTGAARGLGLAFVQAIAAAGASVAMADILQEELASAVAR-LQQAGMKVQ 64 T LAG+ LVTGA+RG+G A QA+A G V + E A+A++ L ++G + Sbjct: 2 TTVELAGQVALVTGASRGIGRAIAQALAKQGVKV-IGTATSESGAAAISEYLAESG---K 57 Query: 65 GFALDLADPASVRIAAAAATQWLGGLDGLVNNAAITNSGGKSSEQLELEMWDRVMDVNVR 124 G LD+ D A + G + LVNNA IT + + +++ E WD V+ N+ Sbjct: 58 GVVLDVNDAARSVALIDEIQKEFGTVTILVNNAGITQD--QLAMRMKDEEWDSVIATNLT 115 Query: 125 GTWLMTNACLPALRASGRGAVVNLSSDTPLWGAPNLLAYVASKSAVIGMTRSLARELGAD 184 ++ A L + + G ++N++S G + Y A+K+ V GM+R+LARE+G+ Sbjct: 116 SVGRLSRAVLRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSR 175 Query: 185 NITVNAVAPGLTLVEATQYVPQARHQHYLDGRAIRRDQLPEDVCGAVVFALSDLARFFTG 244 NITVN VAPG + T+ + + + L + R +PED+ AV F S A + TG Sbjct: 176 NITVNCVAPGFIDTDMTKTLSEQQISALLQQVPLGRLGVPEDIAAAVSFLASPQASYITG 235 Query: 245 QVMAVNGGFVMH 256 + VNGG M+ Sbjct: 236 TTLHVNGGMYMN 247 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 102 bits (253), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 120/250 (48%), Gaps = 12/250 (4%) Query: 13 RRILVTGAARGLGLAFVQAIAAAGASVAMADILQEELASA-VARLQQAGMKVQGFALDLA 71 R LVTG GLG A +AA G V A +A ++ +G + + D++ Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVS 62 Query: 72 DPASVRIAAAAATQWLGGLDGLVNNAAITNSGGKSSEQLELEMWDRVMDVNVRGTWLMTN 131 D S + A + +G +D LVNNA IT + +++E WD VM N+ + MT Sbjct: 63 DYDSAQQCVALIKKEIGEIDVLVNNAGITRD--MTFKKMEKTDWDAVMGTNLDSVFNMTK 120 Query: 132 ACLPALRASGRGAVVNLSSDTPLWGAPNLLAYVASKSAVIGMTRSLARELGADNITVNAV 191 + G G ++N+SS GA Y A+K+ + G T++LA E+ +TVN + Sbjct: 121 PVCDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTI 180 Query: 192 APGLTLVEATQYVPQARHQHYLDGRAIRRDQL-----PEDVCGAVVFALSDLARFFTGQV 246 +PG + +P Q LD + + + + PE+V G V + SD A F TG Sbjct: 181 SPGYIGTKMVTAIP----QDVLDTKIVPQIPMGRLGKPEEVAGLVAYLASDEAAFVTGAN 236 Query: 247 MAVNGGFVMH 256 +A+NGG M+ Sbjct: 237 IAINGGQHMY 246 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 90.9 bits (224), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 107/240 (44%), Gaps = 6/240 (2%) Query: 16 LVTGAARGLGLAFVQAIAAAGASVAMADILQEELASAVARLQQAGMKVQGFALDLADPAS 75 LV+G RGLG A + +AG +VA + A A ++ + F D++D A Sbjct: 6 LVSGGTRGLGAAIAIYLRSAGYAVA---VTYHHNADTAAEFRK-NTSIPVFCWDVSDYAQ 61 Query: 76 VRIAAAAATQWLGGLDGLVNNAAITNSGGKSSEQLELEMWDRVMDVNVRGTWLMTNACLP 135 + +G +D LVNNA IT + W V++ N+ + M+ + Sbjct: 62 CQEGIRQVELDVGPIDILVNNAGITRDA--VLHHMTPGQWIEVINTNLGSVFNMSRNVIE 119 Query: 136 ALRASGRGAVVNLSSDTPLWGAPNLLAYVASKSAVIGMTRSLARELGADNITVNAVAPGL 195 +R G ++N+SS G Y A+K+ + G T+SLA E NITVNA+APG Sbjct: 120 GMRERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKNITVNAIAPGY 179 Query: 196 TLVEATQYVPQARHQHYLDGRAIRRDQLPEDVCGAVVFALSDLARFFTGQVMAVNGGFVM 255 + +PQ + + G + D+ VVF + + F TG VNGG M Sbjct: 180 CDTDMVSAIPQEVLEKIVTGIPVGHLGTGSDIARLVVFLADNASGFITGATFDVNGGQFM 239 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 87.4 bits (215), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 4/197 (2%) Query: 8 TLLAGRRILVTGAARGLGLAFVQAIAAAGASVAMADILQ-EELASAVARL-QQAGMKVQG 65 T L G+ L+TG+ G+GL +A+A GA + + E+A+ A L Q G++ Sbjct: 4 TTLQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDYGVQSTY 63 Query: 66 FALDLADPASVRIAAAAATQWLGGLDGLVNNAAITNSGGKSSEQLELEMWDRVMDVNVRG 125 D++ P + A G +D LVNNA I + E +E WD ++ +N+ Sbjct: 64 HPADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVA--DIEDFPVEKWDAIIAINLSS 121 Query: 126 TWLMTNACLPALRASGRGAVVNLSSDTPLWGAPNLLAYVASKSAVIGMTRSLARELGADN 185 + T LPA++ G ++N++S L G+ AYVA+K ++G+++ A E Sbjct: 122 AFHTTRLALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENAQTG 181 Query: 186 ITVNAVAPGLTLVEATQ 202 +T NA+ PG L Q Sbjct: 182 VTCNAICPGWVLTPLVQ 198 >gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 228 Score = 79.0 bits (193), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 9/229 (3%) Query: 35 AGASVAMADILQEELASAVARLQQAGMKVQGFALDLADPASVRIAAAAATQWLGGLDGLV 94 AGA V +A + L A ++ G LD+ D AS++ A A A G +D LV Sbjct: 2 AGAQVVLAARRVDRLKELRAEIEAEGGAAHVVTLDVTDYASIKSAIAHAETEAGAIDILV 61 Query: 95 NNAAITNSGGKSSEQLELEMWDRVMDVNVRGTWLMTNACLPALRASGRG------AVVNL 148 NNA + G + E + VMD N RG + + + A +G ++N+ Sbjct: 62 NNAGVAARG--RLLDVTPEEYAYVMDTNQRGAFFVAQEVAKRMIARAKGDAKKQHRIINI 119 Query: 149 SSDTPLWGAPNLLAYVASKSAVIGMTRSLARELGADNITVNAVAPGLTLVEATQ-YVPQA 207 +S L P L AY SK+A++ MT+++A E G I VNA+ PG E Q Y Sbjct: 120 ASVAGLRVMPELGAYSMSKAALVHMTKTMAVEWGKFGINVNAICPGYIGTELNQEYFKSE 179 Query: 208 RHQHYLDGRAIRRDQLPEDVCGAVVFALSDLARFFTGQVMAVNGGFVMH 256 + + LD +R PED+ G ++ ++ + F G +M + G H Sbjct: 180 QGKLLLDALPRKRIGKPEDLDGLLLLLAAEESHFINGAIMTADDGMSAH 228 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.131 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 445,464 Number of extensions: 16720 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 81 Number of HSP's successfully gapped: 13 Length of query: 256 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 176 Effective length of database: 736,747 Effective search space: 129667472 Effective search space used: 129667472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)