BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1289.p
         (287 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permeas...    59   3e-10

>gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permease
           [Herminiimonas arsenicoxydans]
          Length = 304

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 2/148 (1%)

Query: 94  EVVLGFFFGALLGLAVGVALGLSPRAEAMLSPYILALQIAPKVAFAPLFVMWLGYTIYPK 153
            V +GF   AL+G+ +G  +G       M +P I  L+    +A+ P+ ++ +     P 
Sbjct: 116 RVAVGFGLAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLL-VFKAADPA 174

Query: 154 IIVAVLIV-FFPIMINVLSAIRTVDPDMVNLVRTLNAGRWQIFHLVEFRSALPALFSGLR 212
            I ++ I   +P++IN    ++ V  D +N+ R LN   W+I   + F S LP + +G+R
Sbjct: 175 AIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKIVTKILFPSVLPYMLTGVR 234

Query: 213 IASTLSVIGVTVGELVGGNQGLGYLLVD 240
           +A   + + +   E++ G  G+G+ + D
Sbjct: 235 LAIGTAWLVIVAAEMLTGGVGIGFWVWD 262


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.141    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 490,458
Number of extensions: 18248
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 206
Effective length of database: 733,452
Effective search space: 151091112
Effective search space used: 151091112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)