BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1287.p (261 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 172 1e-44 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 155 2e-39 gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting A... 151 4e-38 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 147 5e-37 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 139 2e-34 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 172 bits (437), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 97/232 (41%), Positives = 136/232 (58%), Gaps = 8/232 (3%) Query: 4 IEFRKVGKSFVDRQTAQAR--AAVSNVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLYLP 61 IE + V KSF +TA + + NVN ++ GE+V+++G SG GKSTLL + AGL Sbjct: 7 IELKGVAKSF---KTADGTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAA 63 Query: 62 SEGEVFVGGEKVTKPVRKVAFMLQKDLLMPWRNIRANVTLGLEIDGMGQAERCRIADELL 121 +G G+++ PV +A + Q L PW ++ NV LGLE GM ER + AD +L Sbjct: 64 DQGTAKYRGQEIYSPVSGIAMVFQSFALFPWLTVQQNVELGLEAQGMAPDEREKRADAML 123 Query: 122 AKCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLLDEPFSALDAQTKMVLQQDLAK 181 L GF P +LSGGM+QR +AR L P VLL+DE FSALD T L+ D+ + Sbjct: 124 DLIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILE 183 Query: 182 MLYEKQ---KTALFITHDLVEAIALSDRLLVMSERPGTIVEEIEVKLPHRDN 230 M EK+ K L ++H++ EA+ ++DR+LV+S PG I EI + LP N Sbjct: 184 MWEEKRIPTKGILIVSHNIEEAVMMADRILVLSSSPGRIRSEIRINLPRPRN 235 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 155 bits (392), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 142/245 (57%), Gaps = 21/245 (8%) Query: 8 KVGKSFVDRQTAQAR--------AAVSNVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLY 59 + F+D Q A+ A++++NL++ GE +++IG SGCGKSTLLN+ AGL Sbjct: 3 NINGKFIDIQHAEMSFHTKKGVFNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLT 62 Query: 60 LPSEGEVFVGGEKVTKPVRKVAFMLQKDLLMPWRNIRANVTLGLE-----IDGMGQAE-R 113 + G + G ++ P + A + Q L+PW NV L +E ++G + R Sbjct: 63 QSTGGMLLCGNREIAGPSPERAVVFQNHSLLPWLTCYENVYLAVERVFGKVEGKAKLRAR 122 Query: 114 CRIADELLAKCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLLDEPFSALDAQTKM 173 R A L+ H E+ P ++SGGM+QR +AR L+++P+VLL+DEPF ALDA T+ Sbjct: 123 TRAALSLVGLTHA---EQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRA 179 Query: 174 VLQQDLAKMLYEKQKTALFITHDLVEAIALSDRLLVMSERP-GTIVEEIEVKLPHRDNPL 232 LQ +L K++ T + +THD+ EA+ LSD++++++ P TI E +EVKL H P Sbjct: 180 HLQDELLKIVAATGSTVVMVTHDVDEAVLLSDKIVMLTNGPSATIGEILEVKLAH---PR 236 Query: 233 ERRKL 237 ER L Sbjct: 237 ERVAL 241 >gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting ATPase [Herminiimonas arsenicoxydans] Length = 262 Score = 151 bits (381), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 75/201 (37%), Positives = 121/201 (60%), Gaps = 2/201 (0%) Query: 23 AAVSNVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLYLPSEGEVFVGGEKVTKPVRKVAF 82 A V+ + + ++GPSGCGKSTLL G +P+EGE+ + + +TKP Sbjct: 26 TATYRVDFKVYKSDRFVLLGPSGCGKSTLLKAVGGYMMPTEGEMRLHDKVITKPWYDRMM 85 Query: 83 MLQK-DLLMPWRNIRANVTLGLEIDG-MGQAERCRIADELLAKCHLKGFEEHYPYQLSGG 140 + Q+ D L PW+ ++ NV L G + E A + K +L F +HYP+ LSGG Sbjct: 86 VFQEFDQLPPWKTVKQNVMFPLLASGKLKGKEAEDKAMYYIEKVNLSKFADHYPHMLSGG 145 Query: 141 MRQRAALARTLAVDPQVLLLDEPFSALDAQTKMVLQQDLAKMLYEKQKTALFITHDLVEA 200 M+QR A+AR +A++P +LL+DEP++ALDA T+ +Q +L ++ + T LF+TH + EA Sbjct: 146 MKQRVAIARGMAMEPDILLMDEPYAALDALTRKKMQDELLQLWDDTHFTVLFVTHSIAEA 205 Query: 201 IALSDRLLVMSERPGTIVEEI 221 + + +R+L++S PG + E+ Sbjct: 206 VKIGNRILLLSPHPGQVTAEL 226 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 147 bits (371), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 123/215 (57%), Gaps = 9/215 (4%) Query: 1 MIEIEFRKVGKSFVDRQTAQARAAVSNVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLYL 60 M +E R + + F D V N++LSI++GE +++GPSGCGK+TLL M AG Sbjct: 1 MALLEIRNLTRRFGDN------TVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDE 54 Query: 61 PSEGEVFVGGEKVT---KPVRKVAFMLQKDLLMPWRNIRANVTLGLEIDGMGQAERCRIA 117 P G++ + G +T R V + Q L P + N+ LE+ ++E + Sbjct: 55 PDAGKILLDGVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKV 114 Query: 118 DELLAKCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLLDEPFSALDAQTKMVLQQ 177 DE L L GF YP++LSGG RQR ++AR L P++LLLDEP SALDAQ + +Q Sbjct: 115 DEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQI 174 Query: 178 DLAKMLYEKQKTALFITHDLVEAIALSDRLLVMSE 212 +L + E T +++THD EA+ALS R+ VM++ Sbjct: 175 ELINLQKEVGITFVYVTHDQAEALALSHRIAVMNK 209 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 139 bits (349), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 126/218 (57%), Gaps = 13/218 (5%) Query: 2 IEIEFRKVGKSFVDRQTAQARAAVSNVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLYLP 61 + IE + + K F + A+++V+L +GE+ +++GPSGCGK+TLL + AGL P Sbjct: 1 MSIEVKNINKKFGNF------VALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQP 54 Query: 62 SEGEVFVGGEKVTKPV---RKVAFMLQKDLLMPWRNIRANVTLGLEIDGMGQAERCRIAD 118 G+V + GE + R+V F+ Q L + N+ GL + + Sbjct: 55 DHGQVLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIK 114 Query: 119 E----LLAKCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLLDEPFSALDAQTKMV 174 E LL L + YP QLSGG RQR ALAR LAV+P+VLLLDEPF ALDA+ + Sbjct: 115 EKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKE 174 Query: 175 LQQDLAKMLYEKQKTALFITHDLVEAIALSDRLLVMSE 212 L++ L ++ E T++F+THD EA+ ++D++++M++ Sbjct: 175 LRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNK 212 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 463,667 Number of extensions: 18534 Number of successful extensions: 207 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 47 Length of query: 261 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 181 Effective length of database: 736,747 Effective search space: 133351207 Effective search space used: 133351207 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)