BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1286.p
         (224 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...    92   2e-20
gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...    65   2e-12

>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score = 92.4 bits (228), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 11/220 (5%)

Query: 10  NLEVYRQVLPFLLGGLWTTVWLSLLVIPIGVISGLLLALLATQSRSRTVRIAVAVYVDFF 69
           + +V  +  P+LL GL  T+ L+L     GV+ G LLAL A  S  +++    A YV+  
Sbjct: 5   DFDVISRTWPYLLSGLKYTLQLTLTAAIGGVLFGTLLAL-ARLSSFKSLAFLAAAYVNLM 63

Query: 70  RSFPPLVLLILIYFGAPFL-----GLELPKLL----AVALGFMFNNSSYFAEVLRAGIES 120
           RS P L+++   YF  P +     G E P  L    +  + F+   ++YF E++RAGI+S
Sbjct: 64  RSIPLLLVIFWFYFLVPVVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQS 123

Query: 121 VPSGQMEAARSTGLSRTQALAYVVVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLR 180
           +  GQ+ AA + GLS  QA+  VV+PQA RN LP L+   I + +  ++ S++ + + + 
Sbjct: 124 ISKGQVNAAYALGLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVG 183

Query: 181 VA-RDAQSLVYNPSPIVLAALLYLVLLLPLVRWLSRLEHR 219
            + + AQ         +  A++Y VL   L   + +L+ R
Sbjct: 184 ASVKIAQRDSRVVEMYLFVAIVYFVLSFALSSMVKQLQKR 223


>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score = 65.5 bits (158), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 13/211 (6%)

Query: 21  LLGGLWTTVWLSLLVIPIGVISGLLLALLATQSRSRTVRIAVAVYVDFFRSFPPLVLLIL 80
           LL GL  T+ ++        + G L+ +  T  +   V +  A YV+ FR+ P LV   +
Sbjct: 21  LLSGLGWTLAVAFFAWIFAFVLGSLIGIARTTEKRWLVGLGGA-YVELFRNIPLLVQFFV 79

Query: 81  IYFGAP-----------FLGLELPKLLAVALGFMFNNSSYFAEVLRAGIESVPSGQMEAA 129
            YF  P            L   + + +   +   F  SS  AE +R+GI+S+P GQ  A 
Sbjct: 80  WYFVIPGLVPAVKTWVITLDPTIHQFVTAIICLGFFTSSRIAEQVRSGIQSLPRGQRNAG 139

Query: 130 RSTGLSRTQALAYVVVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLRVARDAQSLV 189
            + GL+  Q   +V++P A R  +P L    + +IK T +A  + L EL    R+   + 
Sbjct: 140 YALGLTGMQTYRFVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEMT 199

Query: 190 YNPSPIVLAA-LLYLVLLLPLVRWLSRLEHR 219
           +       AA L+Y+V+ +   R ++ +E R
Sbjct: 200 FRYFEAFGAATLMYVVIAMLANRVMALVERR 230


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.142    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 375,655
Number of extensions: 14511
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 224
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 146
Effective length of database: 743,337
Effective search space: 108527202
Effective search space used: 108527202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)