BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1285.p
         (223 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...    93   1e-20
gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...    85   3e-18

>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score = 92.8 bits (229), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 117/219 (53%), Gaps = 10/219 (4%)

Query: 10  NAEIAARYWPDILRGMGVTVLLSLAVIVSGLLLGLLLAVLRATGKRGLVWLVVAFADVMR 69
           + ++ +R WP +L G+  T+ L+L   + G+L G LLA+ R +  + L +L  A+ ++MR
Sbjct: 5   DFDVISRTWPYLLSGLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAFLAAAYVNLMR 64

Query: 70  ALPPLILIIVLFFAFPYI---------DLAMSSFTATWLALTLVLAAYAEESIWAGIASL 120
           ++P L++I   +F  P +          + + +  + ++   +  AAY  E + AGI S+
Sbjct: 65  SIPLLLVIFWFYFLVPVVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSI 124

Query: 121 PRGQSEAARSTGLSWGQTMAAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEILN- 179
            +GQ  AA + GLS+ Q M  V+LPQA R  +P L  + I + ++ +L S++ +++ +  
Sbjct: 125 SKGQVNAAYALGLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGA 184

Query: 180 TAQAASSNAGNPTPLMLGAAAYLVIFIPVVLLARWLETR 218
           + + A  ++      +  A  Y V+   +  + + L+ R
Sbjct: 185 SVKIAQRDSRVVEMYLFVAIVYFVLSFALSSMVKQLQKR 223


>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score = 84.7 bits (208), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 11/169 (6%)

Query: 21  ILRGMGVTVLLSLAVIVSGLLLGLLLAVLRATGKRGLVWLVVAFADVMRALPPLILIIVL 80
           +L G+G T+ ++    +   +LG L+ + R T KR LV L  A+ ++ R +P L+   V 
Sbjct: 21  LLSGLGWTLAVAFFAWIFAFVLGSLIGIARTTEKRWLVGLGGAYVELFRNIPLLVQFFVW 80

Query: 81  FFAFP-----------YIDLAMSSFTATWLALTLVLAAYAEESIWAGIASLPRGQSEAAR 129
           +F  P            +D  +  F    + L    ++   E + +GI SLPRGQ  A  
Sbjct: 81  YFVIPGLVPAVKTWVITLDPTIHQFVTAIICLGFFTSSRIAEQVRSGIQSLPRGQRNAGY 140

Query: 130 STGLSWGQTMAAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEIL 178
           + GL+  QT   V+LP A R+ +PPLT+ ++++ KNTA+   + L E+ 
Sbjct: 141 ALGLTGMQTYRFVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELF 189


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 315,800
Number of extensions: 9229
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 223
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 145
Effective length of database: 743,337
Effective search space: 107783865
Effective search space used: 107783865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)