BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1284.p (249 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 231 2e-62 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 159 1e-40 gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding pr... 152 2e-38 gi|134094341|ref|YP_001099416.1| phosphate ABC transporter ATP-b... 151 2e-38 gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding pro... 147 6e-37 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 231 bits (590), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 114/239 (47%), Positives = 156/239 (65%) Query: 7 ILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIVV 66 ++E+ + K Y VL V G ++ V GPSGSGKST+++ N LE G I V Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 67 DGVDIMHARADLNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHSHAEAERRARRA 126 DG+ + + +L A+R +IGMVFQ F L+PH+S+ N+ L +V S EA R + Sbjct: 61 DGISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGLKY 120 Query: 127 LEQVGMLEKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELVGSVLQVMR 186 L++VG++ + FPGQLSGGQQQRV IAR +A++P MLFDEPTSALDPE++ VL VM Sbjct: 121 LDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 187 QLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEEGPPEQIFGNPQQARTKTFLARL 245 L + GMTM+VVTHEM FAR A+RV+FMD G IVE+ ++ FG + R + FLA++ Sbjct: 181 GLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRARDFLAKI 239 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 159 bits (402), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 139/237 (58%), Gaps = 6/237 (2%) Query: 7 ILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIVV 66 +LEI L + + NTV+ I L + G+ ++GPSG GK+T+LR +EP AG+I++ Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILL 62 Query: 67 DGVDIMHARADLNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHSHAEAERRARRA 126 DGVD+ + +R VFQ + L+PHM+V GN+ L ++ +E +++ A Sbjct: 63 DGVDLTGVPPEQRVVRT----VFQNYALFPHMTVAGNIAFPL-EMANTPKSEIKQKVDEA 117 Query: 127 LEQVGMLEKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELVGSV-LQVM 185 LE V + AA +P +LSGGQ+QRV IAR + PK++L DEP SALD +L + ++++ Sbjct: 118 LEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELI 177 Query: 186 RQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEEGPPEQIFGNPQQARTKTFL 242 +E G+T + VTH+ A A A + R+ M+ G I + P +I+ P+ F+ Sbjct: 178 NLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFI 234 >gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding protein pxtA [Herminiimonas arsenicoxydans] Length = 262 Score = 152 bits (383), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 133/225 (59%), Gaps = 11/225 (4%) Query: 17 YEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIVVDGVDIMHARA 76 Y LR L++ GQ ++G SG+GKST+LRC N + +PSAG I V G+ ++ R Sbjct: 11 YGDTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSAGTIDVVGLGLLQNRR 70 Query: 77 DLNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHS--------HAEAERRARRALE 128 L A R++ GMVFQQ L + L NV++ ++ H+ E +R RAL+ Sbjct: 71 VLQAHRRQTGMVFQQHQLIARRTALQNVLMG--RLGYHTTLRSLFPLSQEEQRIGLRALD 128 Query: 129 QVGMLEKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELVGSVLQVMRQL 188 +VG+L KA QLSGGQQQRVGIAR + +PK++L DEP ++LDP VL+++RQ+ Sbjct: 129 RVGLLHKALTRVDQLSGGQQQRVGIARALTQQPKLILADEPVASLDPATSEKVLEILRQI 188 Query: 189 -REAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEEGPPEQIFGN 232 +E G++ +V H++ A +DR+V + G ++ + P + N Sbjct: 189 CKEDGISAVVSLHQVDLALKYSDRIVGLAHGKVMFDAVPTDLNEN 233 >gi|134094341|ref|YP_001099416.1| phosphate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 252 Score = 151 bits (382), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 135/245 (55%), Gaps = 11/245 (4%) Query: 8 LEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQ---- 63 LEI L+ Y L+ I+L + ++ IGPSG GKST+LR NR+ + GQ Sbjct: 6 LEIANLNFFYGTFQGLKNINLDIHDKKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAEG 65 Query: 64 -IVVDGVDIMHARADLNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHSHAEAERR 122 I+ G +I+ D+N +R K+GMVFQ+ +P MSV N+ ++ + E + R Sbjct: 66 KIMYHGKNILEPGQDVNMLRAKVGMVFQKPTPFP-MSVYDNIAFGVRLYENLPKGEMDER 124 Query: 123 ARRALEQVGML----EKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELV 178 AL + + +K LSGGQQQR+ IARG+A++P V+L DEPTSALDP Sbjct: 125 VEWALNKAALWTEVKDKLNKSGLSLSGGQQQRLCIARGVAVKPDVLLLDEPTSALDPIST 184 Query: 179 GSVLQVMRQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEEGPPEQIFGNPQQART 238 + +++ +L+ T+ +VTH M A +D +M G +VE G +QIF NP + T Sbjct: 185 AKIEELISELK-GDYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPNKKDT 243 Query: 239 KTFLA 243 + ++ Sbjct: 244 QDYIT 248 >gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 227 Score = 147 bits (370), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 96/219 (43%), Positives = 136/219 (62%), Gaps = 4/219 (1%) Query: 7 ILEIVGLHKSYEGN-TVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIV 65 ++E + K Y N T L I L V G+L+ + GPSG+GKST+L+ +E PSAG ++ Sbjct: 1 MIEFRQVSKKYAQNVTALSDITLSVDKGELVFLAGPSGAGKSTLLKMIAAIERPSAGTVI 60 Query: 66 VDGVDIMHAR-ADLNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHSHAEAERRAR 124 V DI + + L +R+ +G++FQQ L SVL NVML L V + A+AERRAR Sbjct: 61 VSDHDIGRIKNSGLPYLRRNLGLIFQQQRLLSDRSVLANVMLPLI-VCGAARADAERRAR 119 Query: 125 RALEQVGMLEKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELVGSVLQV 184 AL++VG+L+KAA+ P LSGG+QQRV IAR I P+++L DEPT+ LD E VL Sbjct: 120 AALDKVGLLDKAASAPQTLSGGEQQRVSIARAIVNRPQIILADEPTANLDRESANKVLDA 179 Query: 185 MRQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEE 223 ++ G+T L+ TH+ F A RV+++D G I+E Sbjct: 180 LKAFHAVGVTCLISTHDEQFLDTAT-RVIYLDHGKIIES 217 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 422,478 Number of extensions: 15182 Number of successful extensions: 231 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 47 Length of query: 249 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 170 Effective length of database: 740,042 Effective search space: 125807140 Effective search space used: 125807140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)