BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1281.p
         (490 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095900|ref|YP_001100975.1| aspartate carbamoyltransferase,...    61   2e-10

>gi|134095900|ref|YP_001100975.1| aspartate carbamoyltransferase,
           non-catalytic subunit [Herminiimonas arsenicoxydans]
          Length = 354

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 19/232 (8%)

Query: 216 LAEAEASHRAIALSRLIGVPVLIVHVAGAETVQTIRNARLLGAQIYAESCPQYLFLTAED 275
           +AE  A H  + L R+ G  V +  ++ A  ++ +R A+  G  I  +    ++ LT  D
Sbjct: 131 MAETIALHTILELVRVTGTRVHLCRMSSAAGLELVRAAKQEGLPISCDVGAHHIHLTEND 190

Query: 276 IDLPGVEGAKYCCSPPPRDANAQEAVWAGLKDGTLGMYSSDHAPYRFDESGKLPRGEDTT 335
           I   G   +    +PP R    ++A+   L DGT+    SDH P   DE   LP      
Sbjct: 191 I---GFFDSNARLTPPLRSQRDRDAIHRALLDGTIDAICSDHTPVDDDEK-LLP------ 240

Query: 336 FKEMANGVPGIELRLPLL--FSEGV-----QKGRIDIHEFVRLTATNHAHMYGLSHCKGN 388
           F E + G  G+EL L L   ++E       Q  +  + + +   + + A + GL    G 
Sbjct: 241 FGEASPGATGLELLLSLALKWAENCADLDKQSSQQSLVQAIAKISADAARVVGLP--SGQ 298

Query: 389 IAEGLDADLVIWNPERETTITAALLHDNVGYTPYEGRQIKGWPEVVISRGRV 440
           +A G  AD+ +++P    T+ A  L     +TP+ G ++ G  +  I  G +
Sbjct: 299 LALGSVADICLFDPAARWTVAAKALASQGKHTPFLGYELSGQVKTTIVAGHI 350


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,019,596
Number of extensions: 45273
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 405
Effective length of database: 720,272
Effective search space: 291710160
Effective search space used: 291710160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)