BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1280.p (259 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093825|ref|YP_001098900.1| oxidoreductase [Herminiimonas a... 369 e-104 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 97 9e-22 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 92 4e-20 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 81 5e-17 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 77 7e-16 >gi|134093825|ref|YP_001098900.1| oxidoreductase [Herminiimonas arsenicoxydans] Length = 259 Score = 369 bits (947), Expect = e-104, Method: Compositional matrix adjust. Identities = 178/259 (68%), Positives = 208/259 (80%) Query: 1 MDLGISGRRALVCASSKGLGLACAISLAREGVAVTMTARGAEVLEAAAQQVRAATGATVT 60 MDLGI G+ ALVC +S+GLG CA +LA EGV VT+ AR EVLEA A +R++ +T Sbjct: 1 MDLGIKGKTALVCGASRGLGRGCAEALAAEGVHVTLVARNLEVLEATAMDIRSSASGVIT 60 Query: 61 TVAGDITTPEGRALALAACPAPDILVTNAGGPKPGDFREWSREDWIAAIDANMLTPIALI 120 VA DITT EGRA AL CP PDILVTNAGGP GDF +W+R+DWIAA+DANMLTPI LI Sbjct: 61 IVACDITTAEGRAQALHICPQPDILVTNAGGPPTGDFHDWTRDDWIAALDANMLTPIELI 120 Query: 121 KATVDGMMQRGFGRIVNITSGAVKAPIDILGLSNGARSGLTGFVAGLARTTVAHNVTINN 180 KATVDGMM RGFGRI+NITS AVKAPI +LGLSNGARSGLTGFVAGLAR TVA NVTINN Sbjct: 121 KATVDGMMARGFGRIINITSSAVKAPISVLGLSNGARSGLTGFVAGLARKTVAQNVTINN 180 Query: 181 LLPGPFETERLLTTAAASARGSGKSTEQVLAARRAANPARRFGQPAEFGDACAWLCSAQA 240 LLPGPFET+RL + + +A+ GKS +++ A R+ +NPARRFG EFG CA+LCS A Sbjct: 181 LLPGPFETDRLHSIFSEAAKSGGKSVDEISAVRKLSNPARRFGTRQEFGATCAFLCSQHA 240 Query: 241 GFVTGQNLLMDGGAYPGTF 259 G++TGQN+L+DGGAYPGTF Sbjct: 241 GYITGQNILLDGGAYPGTF 259 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 97.1 bits (240), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 113/254 (44%), Gaps = 18/254 (7%) Query: 8 RRALVCASSKGLGLACAISLAREGVAVTMTARGAEVLEAAAQQVRAATGATVTTVAGDIT 67 R ALV GLG A I LA G V T + A+G D++ Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVS 62 Query: 68 TPEGRALALAACPAP----DILVTNAGGPKPGDFREWSREDWIAAIDANMLTPIALIKAT 123 + +A D+LV NAG + F++ + DW A + N+ + + K Sbjct: 63 DYDSAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMTKPV 122 Query: 124 VDGMMQRGFGRIVNITSGAVKAPIDILGLSN--GARSGLTGFVAGLARTTVAHNVTINNL 181 DGM++RG+GRI+NI+S V A G +N A++G+ GF LA VT+N + Sbjct: 123 CDGMVERGWGRIINISS--VNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTI 180 Query: 182 LPGPFETERLLTTAAASARGSGKSTEQVLAARRAANPARRFGQPAEFGDACAWLCSAQAG 241 PG T+ + TA K Q+ P R G+P E A+L S +A Sbjct: 181 SPGYIGTK--MVTAIPQDVLDTKIVPQI--------PMGRLGKPEEVAGLVAYLASDEAA 230 Query: 242 FVTGQNLLMDGGAY 255 FVTG N+ ++GG + Sbjct: 231 FVTGANIAINGGQH 244 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 91.7 bits (226), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 125/258 (48%), Gaps = 25/258 (9%) Query: 5 ISGRRALVCASSKGLGLACAISLAREGVAVTMTARGAEVLEAAAQQVRAATGATVTTVAG 64 ++G+ ALV +S+G+G A A +LA++GV V TA +E AA + A +G V Sbjct: 6 LAGQVALVTGASRGIGRAIAQALAKQGVKVIGTAT-SESGAAAISEYLAESGKGVVLDVN 64 Query: 65 DITTPEGRALALAACPAPD-----ILVTNAGGPKPGDFREWSREDWIAAIDANMLTPIAL 119 D R++AL + ILV NAG + E+W + I N+ + L Sbjct: 65 D----AARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRL 120 Query: 120 IKATVDGMMQRGFGRIVNITSGAVKAPIDILGLSN--GARSGLTGFVAGLARTTVAHNVT 177 +A + GMM+ GRI+NITS V G N A++G+ G LAR + N+T Sbjct: 121 SRAVLRGMMKAKHGRIINITS--VVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNIT 178 Query: 178 INNLLPGPFETERLLTTAAASARGSGKSTEQVLAARRAANPARRFGQPAEFGDACAWLCS 237 +N + PG +T+ T +EQ ++A P R G P + A ++L S Sbjct: 179 VNCVAPGFIDTDMTKTL-----------SEQQISALLQQVPLGRLGVPEDIAAAVSFLAS 227 Query: 238 AQAGFVTGQNLLMDGGAY 255 QA ++TG L ++GG Y Sbjct: 228 PQASYITGTTLHVNGGMY 245 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 80.9 bits (198), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 112/253 (44%), Gaps = 22/253 (8%) Query: 8 RRALVCASSKGLGLACAISLAREGVAVTMTARGAEVLEAAAQQVRAATGATVT--TVAGD 65 + ALV ++GLG A AI L G AV +T A + R T V V+ Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVTYHHNA---DTAAEFRKNTSIPVFCWDVSDY 59 Query: 66 ITTPEG-RALALAACPAPDILVTNAGGPKPGDFREWSREDWIAAIDANMLTPIALIKATV 124 EG R + L P DILV NAG + + WI I+ N+ + + + + Sbjct: 60 AQCQEGIRQVELDVGPI-DILVNNAGITRDAVLHHMTPGQWIEVINTNLGSVFNMSRNVI 118 Query: 125 DGMMQRGFGRIVNITSGAVKAPIDILGLSN--GARSGLTGFVAGLARTTVAHNVTINNLL 182 +GM +R FGRI+NI+S V +G +N A++G+ GF LA + N+T+N + Sbjct: 119 EGMRERNFGRIINISS--VNGERGQIGQANYAAAKAGIFGFTKSLALESARKNITVNAIA 176 Query: 183 PGPFETERLLTTAAASARGSGKSTEQVLAARRAANPARRFGQPAEFGDACAWLCSAQAGF 242 PG +T+ + ++VL P G ++ +L +GF Sbjct: 177 PGYCDTDMVSAIP-----------QEVLEKIVTGIPVGHLGTGSDIARLVVFLADNASGF 225 Query: 243 VTGQNLLMDGGAY 255 +TG ++GG + Sbjct: 226 ITGATFDVNGGQF 238 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 77.4 bits (189), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 120/269 (44%), Gaps = 34/269 (12%) Query: 5 ISGRRALVCASSKGLGLACAISLAREGVAVTMTARGAEVLEAAAQQ--VRAATGATVTTV 62 + G+ AL+ S+ G+GL A +LA++G + + G + E AA Q + G T Sbjct: 6 LQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFG-DANEIAALQAGLTQDYGVQSTYH 64 Query: 63 AGDITTPEGRA----LALAACPAPDILVTNAGGPKPGDFREWSREDWIAAIDANMLTPIA 118 D++ P+ A A A + DILV NAG D ++ E W A I N+ + Sbjct: 65 PADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAINLSSAFH 124 Query: 119 LIKATVDGMMQRGFGRIVNITSGAVKAPIDILGLSNGARSGLTGFVA------GLARTTV 172 + + M ++ +GRI+NI S GL A+ + +VA GL++ T Sbjct: 125 TTRLALPAMKEKNWGRIINIASAH--------GLVGSAQK--SAYVAAKHGIVGLSKVTA 174 Query: 173 AHN----VTINNLLPG----PFETERLLTTAAASARGSGKSTEQVLAARRAANPARRFGQ 224 N VT N + PG P +++ AA + + + +LA ++ P+ F Sbjct: 175 LENAQTGVTCNAICPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQ---PSGEFVT 231 Query: 225 PAEFGDACAWLCSAQAGFVTGQNLLMDGG 253 P + G +LCS A V G MDGG Sbjct: 232 PEQLGALAVFLCSEAANQVRGAAWSMDGG 260 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.132 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 464,120 Number of extensions: 17039 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 7 Length of query: 259 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 179 Effective length of database: 736,747 Effective search space: 131877713 Effective search space used: 131877713 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)