BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1278.p (314 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 89 2e-19 gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-... 79 3e-16 gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [... 70 1e-13 gi|134094687|ref|YP_001099762.1| putative DNA-binding transcript... 65 6e-12 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 60 2e-10 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 119/283 (42%), Gaps = 2/283 (0%) Query: 5 LRQIEVFRAVMTTGSISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYATPEAK 64 LRQ++VF V S S A++ L ++QPAVS + E G ALFE++ ++Y TP Sbjct: 50 LRQLKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGT 109 Query: 65 KLFHEVEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHPEVKL 124 +L H + Q Q + T G LN V+ S G P+ + F H V L Sbjct: 110 ELLHYSRTIIQQFQEAEDAMTQFKGITGGKLN-VAVISAGDYFFPRLLVEFARSHQGVTL 168 Query: 125 TFHCLNYGYLKDRLLARQADLGIIILPMEHPSLQVTPLCSNRLVCVLPYNHELTRRGTLS 184 N L ++L DL I++ P P + V V +H L + + Sbjct: 169 NLSVHNREGLLNQLANNLTDLAIMVRPPTDMDTINEPFAPHPYVIVAAPDHHLVSKKNIP 228 Query: 185 LADLRPFPLISYNRDSPFGGIVGRFYQSEEEPLRPIMEVGSPQNACSLVQMGAGVALVDE 244 ++ L P + + S + + S + L ME+ S + V G G++ + Sbjct: 229 MSTLIHEPFVVREKGSDTWHSMEDGFGSRIDDLNIAMEIKSTETIKQAVIAGMGISFLSA 288 Query: 245 FSVRSWAGANQMVVRPVARAPI-LRANLVHVRTEPLSQLTQAF 286 ++ A + V V P+ L +VH + + L + QAF Sbjct: 289 HTISMELQAGSLTVLDVEGFPVMLNWYVVHRKNKRLPPVAQAF 331 >gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-like protein [Herminiimonas arsenicoxydans] Length = 313 Score = 79.0 bits (193), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 117/245 (47%), Gaps = 7/245 (2%) Query: 3 LNLRQIEVFR-AVMTTGSISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYATP 61 +NL Q+ R AV +++ A++ LF SQP VS+ + E+ +G +F R R+ Sbjct: 1 MNLHQLRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLT 60 Query: 62 E-AKKLFHEVEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHP 120 E + + VE + ++ + + + + + SG I ++ + + +P+ + F + P Sbjct: 61 EPGRAVLKSVEAIMLEIEGLKRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKFP 120 Query: 121 EVKLTFHCLNYGYLKDRLLARQADLGIIILPMEH-PSLQVTPLCSNRLVCVLPYNHELTR 179 +V+L+ N + + +L QADL I + + L P VLP +H L + Sbjct: 121 KVRLSLLQGNPKQIAEMVLMDQADLAIATEAIANMDGLISLPCYQWEHQIVLPLDHPLLK 180 Query: 180 RGTLSLADLRPFPLISYNRDSPFGGIVGRFYQSEEEPLRP--IMEVGSPQNACSLVQMGA 237 +++L +L +P+I+Y DS F G + L+P ++E + V++G Sbjct: 181 SKSITLEELAAYPIITY--DSAFAGRNKIDHAFNLRNLKPDILLEAIDADVIKTYVELGM 238 Query: 238 GVALV 242 G+ ++ Sbjct: 239 GIGII 243 >gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [Herminiimonas arsenicoxydans] Length = 308 Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/301 (21%), Positives = 135/301 (44%), Gaps = 10/301 (3%) Query: 3 LNLRQIEVFRAVMTTG-SISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYA-T 60 +N +Q+ R G +++ + +LF SQP VSR + E+ +G +FER RL T Sbjct: 1 MNFQQLRSIRETARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLT 60 Query: 61 PEAKKLFHEVEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHP 120 + + ++ + + + + + + G L + ++ + + ++P+ + FR P Sbjct: 61 DPGRGILTIIDRLLLEAENLQRASQEYAGQEIGTLAVATTHTQARYMLPEVVQAFRAEFP 120 Query: 121 EVKLTFHCLNYGYLKDRLLARQADLGIIILPM-EHPSLQVTPLCSNRLVCVLPYNHELTR 179 +V++ + ++ + +L+ +AD+GI + + L P V+P H L Sbjct: 121 KVRIALQQSSPEHIAEWVLSGKADIGIATEGLSQFEDLVSFPCYRWHHAIVVPQGHALLS 180 Query: 180 RGTLSLADLRPFPLISYNRDSPFGGIVGRFYQSEEEPLRPIMEVGSPQNACSLVQMGAGV 239 ++L L +PLI+Y+ G + ++S + ++ V +G GV Sbjct: 181 HAPVTLEALAKYPLITYDLGFTGRGHIDDAFKSADIAPDIVLTAMDSDVIQQYVSLGLGV 240 Query: 240 ALVDEFSVRSWAGANQMVVRPVARAPILRANLVHV---RTEPLSQLTQAFIAELQ-QLVR 295 +V +V+ G++ + V + + + N+ + R L Q T +FI + +L R Sbjct: 241 GIVASMAVQH-NGSHGLAV--IDGSHLFAQNVTRLAVRRGAYLRQYTYSFIQQFAPELTR 297 Query: 296 A 296 A Sbjct: 298 A 298 >gi|134094687|ref|YP_001099762.1| putative DNA-binding transcriptional regulatory transcription regulator protein [Herminiimonas arsenicoxydans] Length = 305 Score = 64.7 bits (156), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/240 (22%), Positives = 100/240 (41%) Query: 3 LNLRQIEVFRAVMTTGSISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYATPE 62 +L + +F V TGSI+ +Q ++ A S+ +S E +G L R + T Sbjct: 6 FDLITLSLFVDVARTGSITRGAQQANLALAAASKRISDLEAHLGTVLLYRHANGVTLTDA 65 Query: 63 AKKLFHEVEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHPEV 122 F + Q V+R++ + +D + G + I ++ S +P + F H V Sbjct: 66 GNACFQHALGIIQDVERMSGVMSDYASGIRGQVRIWANTSAITQFLPDDLHAFMQAHAGV 125 Query: 123 KLTFHCLNYGYLKDRLLARQADLGIIILPMEHPSLQVTPLCSNRLVCVLPYNHELTRRGT 182 ++ N G + + + D+GI P + V +L V+P NH L Sbjct: 126 RIDIEERNSGDVVAGIRENRTDIGIFADPTPAEGIAVFTYRKQKLGLVVPKNHPLAAHKQ 185 Query: 183 LSLADLRPFPLISYNRDSPFGGIVGRFYQSEEEPLRPIMEVGSPQNACSLVQMGAGVALV 242 +SL+D + +S + + ++PL+ +V S C +V+ G G+ +V Sbjct: 186 VSLSDALDYDFVSLAEATSLTERLHAACSRLQKPLKLRAQVRSFDAVCRMVKAGVGIGVV 245 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 59.7 bits (143), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/250 (24%), Positives = 104/250 (41%), Gaps = 6/250 (2%) Query: 1 MALNLRQIEVFRAVMTTGSISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYAT 60 M + LRQ+ F V A+ L ++QP +S+ + E +G LF R + T Sbjct: 1 MNIELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALT 60 Query: 61 PEAKKLFHEVEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHP 120 P L E + + Q + +L ++ SG L++ + ++P + FR +P Sbjct: 61 PAGSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYP 120 Query: 121 EVKLTFHCLNYGYLKDRLLARQADLGIIILPMEHPS---LQVTPLCSNRLVCVLPYN-HE 176 V++ D L+ + D+G++I P+ + L P+ S L+ P Sbjct: 121 GVEIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKA 180 Query: 177 LTRRGTLSLADLRPFPLISY-NRDSP-FGGIVGRFYQSEEEPLRPIMEVGSPQNACSLVQ 234 L + +++L L PLI + R +P F + Y+ E Q LV Sbjct: 181 LKGKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEAIQMQTIIGLVS 240 Query: 235 MGAGVALVDE 244 G G+ALV + Sbjct: 241 AGMGIALVPQ 250 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 576,453 Number of extensions: 23295 Number of successful extensions: 100 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 8 Length of query: 314 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 232 Effective length of database: 730,157 Effective search space: 169396424 Effective search space used: 169396424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)