BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1272.p (551 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093993|ref|YP_001099068.1| dihydrolipoyllysine-residue ace... 493 e-140 gi|134094977|ref|YP_001100052.1| dihydrolipoyltranssuccinate tra... 162 4e-41 gi|134093994|ref|YP_001099069.1| dihydrolipoyl dehydrogenase (E3... 132 4e-32 >gi|134093993|ref|YP_001099068.1| dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) [Herminiimonas arsenicoxydans] Length = 455 Score = 493 bits (1269), Expect = e-140, Method: Compositional matrix adjust. Identities = 238/309 (77%), Positives = 265/309 (85%), Gaps = 5/309 (1%) Query: 246 SPSVRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAG---STSVAASAPATNGSG 302 SPS+RKFARELGVDL V +GPKGRI Q DVQ +VK +A S++ A+ P + G Sbjct: 149 SPSIRKFARELGVDLGSVAGSGPKGRITQQDVQTYVKTALAAGPVSSAPVAAPPGASRGG 208 Query: 303 AGMNLLPWPSLDFSKFGETELQALSRIKKISGPNLHRNWVMIPHVTQFDEADVTELEEFR 362 AG++LLPWPSLDFSKFGET LQ LSRIKKISGPNLHRNWVMIPHVTQ+DEADVTELEE R Sbjct: 209 AGLDLLPWPSLDFSKFGETTLQPLSRIKKISGPNLHRNWVMIPHVTQYDEADVTELEELR 268 Query: 363 KTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFNSSLDAKGENLILKKFYNIGFAAD 422 K++N A AK S VKLT+LAFVIKA V+ALKK+P FNSSLDA GENLILK++YNIGFAAD Sbjct: 269 KSTNTALAK--SGVKLTILAFVIKACVAALKKYPEFNSSLDAAGENLILKQYYNIGFAAD 326 Query: 423 TPNGLVVPVIKNADQKSIGQIAIEMGELSAQARDGKLKPADMQGATFTISSLGGIGGTAF 482 TP GLVVPV+K DQK++ QIA EMGELSAQARDGKLKPADMQGATFTISSLGGIGGT F Sbjct: 327 TPQGLVVPVVKGVDQKTVTQIAQEMGELSAQARDGKLKPADMQGATFTISSLGGIGGTYF 386 Query: 483 TPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSYDHRVIDGAMGARFSAYLAEV 542 TP+INAPEVAI+GLSK+ KPVWDGKQFVPRL++P SLSYDHRVIDGA GARF YL+EV Sbjct: 387 TPLINAPEVAIIGLSKTSMKPVWDGKQFVPRLIMPLSLSYDHRVIDGAQGARFVTYLSEV 446 Query: 543 LGDLRKSLL 551 L DLRKSLL Sbjct: 447 LTDLRKSLL 455 Score = 134 bits (338), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 67/76 (88%), Positives = 73/76 (96%) Query: 1 MSQVEVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKEIK 60 MS VEVKVPDIGDFKEVE+IE++VKVGDTIK+DQSLITVESDKASMEIPSS AGVVKEIK Sbjct: 1 MSTVEVKVPDIGDFKEVEIIELLVKVGDTIKIDQSLITVESDKASMEIPSSHAGVVKEIK 60 Query: 61 VKVGDKVAEGSLLVIV 76 VK+GDKVAEGSLL+ V Sbjct: 61 VKLGDKVAEGSLLLTV 76 >gi|134094977|ref|YP_001100052.1| dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex [Herminiimonas arsenicoxydans] Length = 414 Score = 162 bits (410), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 133/414 (32%), Positives = 214/414 (51%), Gaps = 31/414 (7%) Query: 120 VEIEVPDIGD-FKEVEVIEVMVKVGDTVKAEQSLLTVESDKASMEIPSSHAGVIKELKVK 178 +EI VP + + E +++ KVG+TV +++++ +E+DK +E+P+ AGVI ++ Sbjct: 4 LEITVPQLSESVAEATLLQWHKKVGETVARDENMIDIETDKVVLELPAPAAGVITQIIRD 63 Query: 179 LGDKVSKGSIIATIEAAGGAPAAAPAAAPAAAPAAAPAPAAAPAPAAAAVPAIATASATS 238 V G +IA ++ AA A+APA A AA A +A++ Sbjct: 64 DNSTVVAGEVIALLDTD--------------LSAAVAPAASAPAAATAAPTAAPAMAASA 109 Query: 239 TGGKAHASPSVRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGSTSVAASAPAT 298 A P+ K E + S V TG GR+ + DV N ++ A + AA PA Sbjct: 110 NAASNIAMPAAAKMLAENQLAASDVAGTGKDGRVTKGDVINQLEKKQAAPVATAAK-PAL 168 Query: 299 NGSGAGMN---LLPWPSLDFSKFGETELQALSRIKKISGPNLHRNWVMIPHVTQFDEADV 355 A M+ L P E +SR++ L ++ +T F+E ++ Sbjct: 169 QQVTAPMSATMLANRPE---------ERVPMSRLRARIAERLLQSQSSNAILTTFNEVNM 219 Query: 356 TELEEFRKTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFNSSLDAKGENLILKKFY 415 + + R D F K VKL ++F +KA V+ALKK+P N+S+D G +++ ++ Sbjct: 220 QPVMDLRAKYKDKFEKEHG-VKLGFMSFFVKAVVAALKKYPIINASVD--GNDIVYHGYF 276 Query: 416 NIGFAADTPNGLVVPVIKNADQKSIGQIAIEMGELSAQARDGKLKPADMQGATFTISSLG 475 +IG A +P GLVVP++++ADQ +I +I ++ E +A++GKL D+ G TF+IS+ G Sbjct: 277 DIGIAVGSPRGLVVPILRDADQMTIAEIEKKIAEFGNKAKEGKLTLDDLNGGTFSISNGG 336 Query: 476 GIGGTAFTPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSYDHRVIDG 529 G TPIIN P+ AILG+ + + V + Q V R M ++SYDHR+IDG Sbjct: 337 VFGSMLSTPIINPPQSAILGIHATKERAVVENGQIVIRPMNYFAMSYDHRIIDG 390 >gi|134093994|ref|YP_001099069.1| dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (dihydrolipoamide dehydrogenase) [Herminiimonas arsenicoxydans] Length = 611 Score = 132 bits (332), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 65/76 (85%), Positives = 73/76 (96%) Query: 1 MSQVEVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKEIK 60 MS +EVKVPDIGDFKEVE+IE++V VGDTIKVDQSLITVESDKASMEIPSS AGVVKE+K Sbjct: 1 MSTIEVKVPDIGDFKEVEIIEMLVNVGDTIKVDQSLITVESDKASMEIPSSHAGVVKELK 60 Query: 61 VKVGDKVAEGSLLVIV 76 VK+GDKVAEGSLL+I+ Sbjct: 61 VKLGDKVAEGSLLLIL 76 Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 55/71 (77%), Positives = 69/71 (97%) Query: 119 TVEIEVPDIGDFKEVEVIEVMVKVGDTVKAEQSLLTVESDKASMEIPSSHAGVIKELKVK 178 T+E++VPDIGDFKEVE+IE++V VGDT+K +QSL+TVESDKASMEIPSSHAGV+KELKVK Sbjct: 3 TIEVKVPDIGDFKEVEIIEMLVNVGDTIKVDQSLITVESDKASMEIPSSHAGVVKELKVK 62 Query: 179 LGDKVSKGSII 189 LGDKV++GS++ Sbjct: 63 LGDKVAEGSLL 73 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.128 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 781,769 Number of extensions: 29070 Number of successful extensions: 118 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 7 Length of query: 551 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 465 Effective length of database: 716,977 Effective search space: 333394305 Effective search space used: 333394305 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)