BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1271.p
         (898 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093992|ref|YP_001099067.1| pyruvate dehydrogenase subunit ...  1615   0.0  

>gi|134093992|ref|YP_001099067.1| pyruvate dehydrogenase subunit E1
           [Herminiimonas arsenicoxydans]
          Length = 898

 Score = 1615 bits (4182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 755/898 (84%), Positives = 835/898 (92%)

Query: 1   MSAQIDQVLAQAANDPDVMETQEWLDALEAVIEKEGPDRAHYLMERMVDLARRRGAHIPF 60
           MSAQIDQVLAQAANDPDVMETQEWLDALEAVIE EGPDRAHYLMER++DLARRRGA IPF
Sbjct: 1   MSAQIDQVLAQAANDPDVMETQEWLDALEAVIENEGPDRAHYLMERLIDLARRRGAQIPF 60

Query: 61  SSNTAYVNTIPADQGEHCPGNLEYEERLRSWMRWNAMAMVVKANRVDGDLGGHLSSFASL 120
           SS TAYVNTIPAD GE+ PGNLEYEERLRSWMRWNAMAMVVKANRVDGDLGGH+SSFASL
Sbjct: 61  SSTTAYVNTIPADLGENSPGNLEYEERLRSWMRWNAMAMVVKANRVDGDLGGHISSFASL 120

Query: 121 ANMLGIGFNHFWHAPTEDHGGDLLYIQGHSSPGIYARAFLEGRLTEDQLIHFRREADGHG 180
           ANMLG GFNHFWHAPTEDHGGDLLYIQGHSSPG+YARAFLEGRL+E+QLI+FRRE DGHG
Sbjct: 121 ANMLGTGFNHFWHAPTEDHGGDLLYIQGHSSPGVYARAFLEGRLSEEQLINFRREVDGHG 180

Query: 181 LSSYPHPKLMPEFWQFPTVSMGLGPLMAIYQARFLKYLHARGIAKTDNRKVWAFCGDGEM 240
           LSSYPHPKLMP+FWQFPTVSMGLGPLMAIYQARFLKYL AR IAKTDNRKVW FCGDGEM
Sbjct: 181 LSSYPHPKLMPDFWQFPTVSMGLGPLMAIYQARFLKYLQAREIAKTDNRKVWVFCGDGEM 240

Query: 241 DEPESMGAIGMAGREKLNNLVIVVNCNLQRLDGPVRGNGKIIQELESDFRGAGWNVVKVI 300
           DE ESMGAIG+AGRE+L+NLV+VVNCNLQRLDGPVRGNGKIIQELE +FRGAGWNV+K+I
Sbjct: 241 DEVESMGAIGVAGREQLDNLVMVVNCNLQRLDGPVRGNGKIIQELEGEFRGAGWNVIKII 300

Query: 301 WGSGWDELLAKDKDGILQKVMMETVDGEYQNYKAKDGAYVRKHFFGKHPKLLGMVSKMSD 360
           WGS WD LLAKDKDGILQ+VMMET+DGEYQNYKAKDGAYVRK+FFGKHPKLL MVS+MSD
Sbjct: 301 WGSNWDPLLAKDKDGILQRVMMETLDGEYQNYKAKDGAYVRKNFFGKHPKLLEMVSRMSD 360

Query: 361 DDIWRLTRGGHDPHKIYAAFKVAQESKDQPTVILAKSIKGYGFGKAGEARNTAHNTKKLD 420
           DD+W L RGGHDPHK+YA FK AQE K QPTV+L K++KGYG GK+GEARNTAH TKKLD
Sbjct: 361 DDLWHLLRGGHDPHKVYAGFKQAQEHKGQPTVLLVKTVKGYGMGKSGEARNTAHQTKKLD 420

Query: 421 DEAIRAMRDRFQLPISDAELPNIPFFKPADDAPEMQYLHERRKALGGYLPQRRVHADEKL 480
           DEA+R MRDRF LPI+D  L +IPFFKPADDAPEM+YLHERR ALGGYLPQRR  ADEKL
Sbjct: 421 DEAVREMRDRFNLPIADEHLADIPFFKPADDAPEMKYLHERRAALGGYLPQRRQQADEKL 480

Query: 481 PVPELSAFQAMLEPTAEGREISTTAAYSRVLTALLRDPNLGPRVVPIMVDESRTFGMEGL 540
           PVPEL+AF+A+L+PTAEGREISTT AY R+++ LLRD +LG R+VPI+VDESRTFGMEGL
Sbjct: 481 PVPELAAFKAVLDPTAEGREISTTQAYVRIISILLRDASLGKRLVPILVDESRTFGMEGL 540

Query: 541 FRQIGIFSQVGQLYEPVDKDQVMYYREDKAGQILQEGINEAGGMSSWIAAATSYSTNNRV 600
           FRQIGI+++ GQLYEPVDKDQV YYREDKAGQILQEGINEAG M+SWIAAATSYSTNNR+
Sbjct: 541 FRQIGIYNREGQLYEPVDKDQVSYYREDKAGQILQEGINEAGAMASWIAAATSYSTNNRI 600

Query: 601 MIPFYTYYSMFGLQRIGDLAWAAGDMRARGFLIGGTAGRTTLNGEGLQHEDGHSHVFASA 660
           M+PFYT+YSMFGLQRIGDLAWAAGDMRARGFL+GGTAGRTTLNGEGLQHEDGHSH+ AS 
Sbjct: 601 MVPFYTFYSMFGLQRIGDLAWAAGDMRARGFLLGGTAGRTTLNGEGLQHEDGHSHILAST 660

Query: 661 IPNCIPYDPTFAHEVAVIIHDGLRRMVANQEDVFYYITVMNENYGHPGIKPGQEEGIVKG 720
           IPNC+PYDPTFAHEVAVI+ DGL+RM+ NQEDVFYYIT+MNENY  PG+K GQE+ I+KG
Sbjct: 661 IPNCVPYDPTFAHEVAVIMQDGLKRMIENQEDVFYYITLMNENYPQPGLKEGQEQDIIKG 720

Query: 721 LYLLNEGGKQNQLRVQLLGSGTILREVIAAADLLREDWKVDADVWSAPSFTLLARDGQDV 780
           LYLL EG K+++ RVQL+GSGTILREVIAAADLL++DW + +DVWSAPSFTLLARDGQDV
Sbjct: 721 LYLLQEGAKKSKNRVQLMGSGTILREVIAAADLLKDDWGIVSDVWSAPSFTLLARDGQDV 780

Query: 781 ERWNMLHPAEAPKKSYFEQSLEGSEGPIVVSTDYMRTYAEQVRAFVPKGRSYKVLGTDGF 840
           ERWNMLHPA+AP+ ++  QSL+G+ GPIVV+TDYMRT+AEQVRAF+PK R+YKVLGTDGF
Sbjct: 781 ERWNMLHPADAPRVAHVTQSLQGTSGPIVVATDYMRTFAEQVRAFIPKERTYKVLGTDGF 840

Query: 841 GRSDTRAKLREFFEVNRYFVTVAALKSLADEGKIKPEVVAQAIAKYGIDPNKPNPVTL 898
           GRSD+RAKLREFFEVNRYFVTVAALK+LAD+G I P VVA+AIAKYGI+P K NPVTL
Sbjct: 841 GRSDSRAKLREFFEVNRYFVTVAALKALADDGAIAPSVVAEAIAKYGINPEKVNPVTL 898


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,854,379
Number of extensions: 81767
Number of successful extensions: 208
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 1
Length of query: 898
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 808
Effective length of database: 703,797
Effective search space: 568667976
Effective search space used: 568667976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)