BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1269.p
         (281 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093991|ref|YP_001099066.1| bifunctional 5,10-methylene-tet...   422   e-119

>gi|134093991|ref|YP_001099066.1| bifunctional
           5,10-methylene-tetrahydrofolate dehydrogenase/
           5,10-methylene-tetrahydrofolate cyclohydrolase
           [Herminiimonas arsenicoxydans]
          Length = 283

 Score =  422 bits (1085), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/280 (77%), Positives = 243/280 (86%)

Query: 1   MSAQLIDGNLLSQQLRAEVAQRAAALTAQGKQPGLAVILVGDSPASQVYVRNKVKACQDN 60
           MSA +IDGNLLSQQLR +VA RAAAL+A+GKQPGLAVILVG  PASQVYVRNKVKAC+DN
Sbjct: 1   MSAHIIDGNLLSQQLRQDVATRAAALSAKGKQPGLAVILVGADPASQVYVRNKVKACEDN 60

Query: 61  GLHSVLEKYEASMTEAELLARIDALNGDPKINGILVQLPLPAHIDAHKVIEAIAPEKDVD 120
           GL S+LEKYEA MTEA LLARI ALN DP I+GILVQ+PLP HID  KVIEAI+P KDVD
Sbjct: 61  GLFSLLEKYEADMTEAALLARIAALNNDPAIHGILVQMPLPKHIDPTKVIEAISPRKDVD 120

Query: 121 GFHVSNAGLLMTGQPLFRPCTPYGVMKMLESIEYPVRGANAVVVGASNIVGKPQAMLLLQ 180
           G+ V +AG L+TG P FRPCTPYG MK++ES    + G +AVV+G SN VGKP A+LLLQ
Sbjct: 121 GYSVLSAGELLTGLPGFRPCTPYGCMKLIESTGTKIAGKHAVVIGRSNTVGKPMALLLLQ 180

Query: 181 AGATVTICNSKTRDLGHHTRQADILVVATGKRNIVTADMVKPGAVVIDVGMNRDDNGKLC 240
           A ATVTIC+S T DLG+HTRQADI+V ATG+RN +TADM+KPGA+VIDVG+NRDDNGKLC
Sbjct: 181 ANATVTICHSGTADLGYHTRQADIVVAATGRRNTLTADMIKPGAIVIDVGINRDDNGKLC 240

Query: 241 GDVDFANAKEVAGWITPVPGGVGPMTITMLLVNTIEAAER 280
           GDVDFA AKEVAG I+PVPGGVGPMTITMLLVNTIEAAER
Sbjct: 241 GDVDFAAAKEVAGHISPVPGGVGPMTITMLLVNTIEAAER 280


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 528,942
Number of extensions: 21996
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 200
Effective length of database: 733,452
Effective search space: 146690400
Effective search space used: 146690400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)