BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1263.p (436 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093986|ref|YP_001099061.1| D-amino acid dehydrogenase smal... 767 0.0 gi|134093638|ref|YP_001098713.1| putative D-amino acid dehydroge... 687 0.0 gi|134094950|ref|YP_001100025.1| putative D-amino acid dehydroge... 239 2e-64 >gi|134093986|ref|YP_001099061.1| D-amino acid dehydrogenase small subunit [Herminiimonas arsenicoxydans] Length = 443 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/435 (81%), Positives = 397/435 (91%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIERQPGAAQETSFANGCQISVSHAEPWANPAA 60 MKVIVLG+GIIGTASAWFL K G+DVTVI+RQPGAAQETSFANGCQISVSHAEPWANPAA Sbjct: 6 MKVIVLGSGIIGTASAWFLNKAGHDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 65 Query: 61 PMKVLKWLGKEDAPLLYRFRTEWLQWKWALAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 PMKVLKWLGKEDAPLLYRFR EWLQWKWAL FLRECT ART+ENIR IVA+CEYSRQTL Sbjct: 66 PMKVLKWLGKEDAPLLYRFRPEWLQWKWALNFLRECTPARTNENIRQIVAICEYSRQTLV 125 Query: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 +RAETGI+YD+L RGILHFYTE+KEF DSLPAAKLMRDLGCPR+SI DEV+RIEPALA Sbjct: 126 GLRAETGIEYDNLNRGILHFYTEQKEFDDSLPAAKLMRDLGCPRDSISTDEVIRIEPALA 185 Query: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSEEAGVEFRYSTTITRLITEGTGAAARVTG 240 IR+KIVGGDFTA DESGDV+K T+GLAKKS EAGV F+++TT+TRLITEG GA+A++TG Sbjct: 186 RIRDKIVGGDFTANDESGDVYKFTSGLAKKSAEAGVNFQFNTTVTRLITEGAGASAKITG 245 Query: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 VEII P+GRHEVL AD FV+AMGSFS L KPLGIDL++YPGKGYSATY +T+P AAP+V Sbjct: 246 VEIITPEGRHEVLHADAFVLAMGSFSTALAKPLGIDLMIYPGKGYSATYAVTDPSAAPSV 305 Query: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTR+LNT RCEAITRRTRELFPD CDYENP Y Sbjct: 306 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRDLNTARCEAITRRTRELFPDACDYENPVY 365 Query: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDFAFT 420 WTGLRPLTPSNVPY+GKTKF+NL+LNTGHGTLGWTMGCGSGRA+A+IV+GH PE++F FT Sbjct: 366 WTGLRPLTPSNVPYIGKTKFSNLFLNTGHGTLGWTMGCGSGRALADIVSGHQPEVNFRFT 425 Query: 421 GLPRWNRARQVVTQA 435 G+P + R + Q+ Sbjct: 426 GMPYRSSDRIITPQS 440 >gi|134093638|ref|YP_001098713.1| putative D-amino acid dehydrogenase [Herminiimonas arsenicoxydans] Length = 442 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/425 (74%), Positives = 368/425 (86%), Gaps = 1/425 (0%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIERQPGAAQETSFANGCQISVSHAEPWANPAA 60 MKVIVLG+GIIGTASAWFL K G++VTVI+RQPGAAQETSFANGCQISVSHA PWAN A Sbjct: 1 MKVIVLGSGIIGTASAWFLNKAGHEVTVIDRQPGAAQETSFANGCQISVSHATPWANKTA 60 Query: 61 PMKVLKWLGKEDAPLLYRFRTEWLQWKWALAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 PM +LK LGKEDAPLLYRFR EWLQWKW + FLREC ART NI IVA+ EYSRQTLQ Sbjct: 61 PMTILKSLGKEDAPLLYRFRAEWLQWKWGVNFLRECMPARTVHNIHQIVAIAEYSRQTLQ 120 Query: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 AVR+E I YD LTRGILHFYT +K+F +SL +A +MRDLGCPR + ADE V++EPALA Sbjct: 121 AVRSEVDIDYDCLTRGILHFYTSQKDFDESLASAAVMRDLGCPRTPMTADEAVKLEPALA 180 Query: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSEEAGVEFRYSTTITRLITEGTGAAARVTG 240 IR +IVG DFT TDESGD++K TTGLA+K++E GV F++STT+TRLITEG+GAAARVTG Sbjct: 181 HIRPQIVGADFTETDESGDIYKFTTGLARKAQERGVHFQFSTTVTRLITEGSGAAARVTG 240 Query: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 VE+I+ +GRH+ L AD FV+A+GSFS L++PLGI L++YPGKGYSATY + N + APTV Sbjct: 241 VEVIDAEGRHQTLHADAFVMALGSFSVPLLQPLGIQLMIYPGKGYSATYPLVNAELAPTV 300 Query: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 SL DDGYKLV+SRLGD+LRVAGTCE NGYTRELN TRC AITRRTRELFPD CDYE P Y Sbjct: 301 SLIDDGYKLVLSRLGDKLRVAGTCEFNGYTRELNATRCAAITRRTRELFPDACDYEQPAY 360 Query: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDFAFT 420 W GLRPLTPSNVPY+GKTKF+NL+LNTGHG+LGWTMGCGSGRAIA+I++GH P++DFAFT Sbjct: 361 WAGLRPLTPSNVPYIGKTKFSNLFLNTGHGSLGWTMGCGSGRAIADIISGHQPDVDFAFT 420 Query: 421 GL-PR 424 G+ PR Sbjct: 421 GMAPR 425 >gi|134094950|ref|YP_001100025.1| putative D-amino acid dehydrogenase small subunit [Herminiimonas arsenicoxydans] Length = 414 Score = 239 bits (609), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 128/403 (31%), Positives = 206/403 (51%), Gaps = 12/403 (2%) Query: 15 SAWFLKKQGYDVTVIERQPGAAQETSFANGCQISVSHAEPWANPAAPMKVLKWLGKEDAP 74 +A+FL + G+ V VIER+ A+E SF + ++ + PWA P A +L L K ++P Sbjct: 15 TAYFLAEAGHQVVVIERRNNVAEEASFGDSGILAPASIAPWAAPGAAKSLLSHLLKSESP 74 Query: 75 LLYRFRTEWLQWKWALAFLRECTAARTDENIRNIVALCEYSRQTLQAVRAETGIQYDHLT 134 LL+ + W+W +L+EC R N + + YS Q ++ +R + Y+ Sbjct: 75 LLFNRMLDPSMWRWIRRWLKECDIERYQINRNRMQRIAFYSDQIMRQLRELHQLDYEQ-A 133 Query: 135 RGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALASIRNKIVGGDFTAT 194 G L + E++ Q + PA + G P + AD IEPAL + + G T Sbjct: 134 PGYLQLFRSERDLQLAKPAFDFLAAHGIPHDFPDADGARAIEPAL-NPHTPLAGSLHLPT 192 Query: 195 DESGDVFKLTTGLAKKSEEAGVEFRYSTTITRLITEGTGAAARVTGVEIINPDGRHEVLK 254 DESG+ T + + ++ GVEF + + + G ++ Sbjct: 193 DESGNCPLFTRQMRQLAQAIGVEFHFGCNVKSIRQSEHGVDIQI----------EDRSFA 242 Query: 255 ADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTVSLTDDGYKLVVSRL 314 AD V+A G+ S +L+ PLG+ L +YP K YSAT I N ++AP +L D+ YK+ ++R+ Sbjct: 243 ADRVVLASGADSSKLLAPLGLHLPVYPVKSYSATATIRNFESAPVAALMDESYKVAITRM 302 Query: 315 GDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTYWTGLRPLTPSNVPY 374 G+R+R++G EL T +L + + + FPD C+Y +W+G + P P Sbjct: 303 GNRIRISGMAELGARTSDLRQAGLNTLLKVGYDWFPDACNYNTAAFWSGTSLMLPDGPPL 362 Query: 375 VGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDF 417 +G T+ N+Y+N GHG+ GW M GS R +A+IV+G P+ID Sbjct: 363 IGATQVRNVYVNIGHGSTGWAMAAGSARVLADIVSGRTPDIDL 405 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 871,772 Number of extensions: 37116 Number of successful extensions: 100 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 3 Length of query: 436 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 352 Effective length of database: 723,567 Effective search space: 254695584 Effective search space used: 254695584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)