BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1262.p
         (299 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096612|ref|YP_001101687.1| putative membrane-bound beta-hy...   314   4e-87

>gi|134096612|ref|YP_001101687.1| putative membrane-bound
           beta-hydroxylase [Herminiimonas arsenicoxydans]
          Length = 254

 Score =  314 bits (804), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 145/254 (57%), Positives = 192/254 (75%), Gaps = 2/254 (0%)

Query: 44  MYAFSRVPAVPYPAVKEFQDLAIIDQNWEVIRDEAVALREMAKIKAAEKNDDAGFNSFFK 103
           M  FSR+P  PY  +  + ++  +   W+VIRDEA+AL+E   IKA+   DDAGFNSFF+
Sbjct: 1   MTLFSRLPDRPYHQLDSYPEIRPLIDQWQVIRDEALALQE--HIKASANFDDAGFNSFFR 58

Query: 104 AGWKRFYLKWYNASHPSAEKFCPKTVEILKRIPSVKAAMFAELAPGGTLNRHRDPFAGSL 163
            GW RFYLKWY  SHPSA++ CP+TV IL+ IP +KAAMFA+L PG  L RHRDP+AGSL
Sbjct: 59  RGWTRFYLKWYGESHPSAQQRCPRTVAILESIPIIKAAMFAQLPPGADLGRHRDPYAGSL 118

Query: 164 RYHLGLVTPNDDRCFIEVDGQRYSWRDGQSVVFDETFIHWAQNGTETNRIILFCDVERPL 223
           RYHLGLVTPNDDRCFI VDG RYSWRDG++V+FDET+IHWA N ++ NRIILFCD+ER +
Sbjct: 119 RYHLGLVTPNDDRCFIAVDGIRYSWRDGEAVIFDETYIHWAANESDKNRIILFCDLERKM 178

Query: 224 RYRWAEAINGFLGRTMMTAASSPNETGDQTGRVNKLFRFVWLAGQYRRRFKNWNKTVYKI 283
           ++RWA+A+N + GR +M A ++PN+  D+TG VN+ FR V+   +  +R K  NK +Y I
Sbjct: 179 KWRWAQAVNRWFGRKVMAATAAPNDVQDRTGGVNRAFRHVYAVRRAGKRLKAHNKPLYYI 238

Query: 284 TKFSLIIAVALLII 297
            K+SL++++   I+
Sbjct: 239 VKWSLLLSIVAGIL 252


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 571,785
Number of extensions: 23484
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 218
Effective length of database: 733,452
Effective search space: 159892536
Effective search space used: 159892536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)