BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1261.p (348 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096457|ref|YP_001101532.1| putative GGDEF family protein [... 361 e-101 gi|134096339|ref|YP_001101414.1| hypothetical protein HEAR3185 [... 110 1e-25 gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [... 107 6e-25 gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 103 8e-24 gi|134096466|ref|YP_001101541.1| putative signal peptide [Hermin... 100 1e-22 >gi|134096457|ref|YP_001101532.1| putative GGDEF family protein [Herminiimonas arsenicoxydans] Length = 328 Score = 361 bits (927), Expect = e-101, Method: Compositional matrix adjust. Identities = 173/325 (53%), Positives = 233/325 (71%), Gaps = 6/325 (1%) Query: 26 ISALYQLTEVQSIRMLDIFTLRDEYFVQEKMVIRDGTVHTIAE--LTSDDPKEPLAAYPA 83 ++AL + ++ R++++F R + ++ ++ I DG V T+ E S+ E + YP Sbjct: 1 MTALLNMIGIKHARVMELFQSRGDLLIRPRVWIADGKVQTVDEEASASELAGETIVTYPG 60 Query: 84 MLACIRNHLNEYQETTDSGEHLLWLPVWLHGKMNSCLEIRSQSAFTPAMMDVIHGIFHVY 143 ++ACI N +E +G+H LW+P+W + K+++CLEI + + FTP ++ V+ GI VY Sbjct: 61 LVACIAQRKNRLEEVRANGQHALWIPIWQNDKVSTCLEIVNDTPFTPQILQVMEGILSVY 120 Query: 144 CNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAPHEAHSLEENERRHEDHGEPKGHW 203 NYQSLLDYSERD+LTGL NRKTFDE+F R A P ++ ERRH H + K W Sbjct: 121 RNYQSLLDYSERDSLTGLLNRKTFDEKFARMVNA-KPADSAPHGNEERRH--HTDVKSQW 177 Query: 204 LGVVDIDHFKQVNDRYGHLYGDEVLILVANILRASFRAHDRIFRFGGEEFVILLRSTTLS 263 L V+DIDHFK+VND +GHLYGDEVLILVAN+LRASFRA DR+FRFGGEEFVILLRSTTL+ Sbjct: 178 LAVIDIDHFKRVNDVFGHLYGDEVLILVANVLRASFRAQDRVFRFGGEEFVILLRSTTLA 237 Query: 264 DARKIFDRFRQNVQEYDFPQVGKVTVSLGFVGIARETPVVILGHADQALYHAKKSGRNRI 323 DA+ +F+RFR+N++ Y FPQVGK+TVS+GF I ETPV ILGHADQALY+AK GRN++ Sbjct: 238 DAQMVFERFRENIEHYAFPQVGKITVSIGFASIGHETPVTILGHADQALYYAKDHGRNQV 297 Query: 324 CYYQELVNAGVLRSGITTNDTVEFF 348 CYY L+ G+L + ++VEFF Sbjct: 298 CYYDALLAQGLLHADKKV-ESVEFF 321 >gi|134096339|ref|YP_001101414.1| hypothetical protein HEAR3185 [Herminiimonas arsenicoxydans] Length = 412 Score = 110 bits (274), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 110/201 (54%), Gaps = 20/201 (9%) Query: 137 HGIFHVYCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAPHEAHSLEENERRHEDH 196 + +F +++ + ++RDAL G FNR RY A +LE+ +R +D Sbjct: 228 NALFKANRKIRNIEEDAQRDALLGCFNR--------RYIVA-------ALEQQKRLADDA 272 Query: 197 GEPKGHWLGVVDIDHFKQVNDRYGHLYGDEVLILVANILRASFRAHDRIFRFGGEEFVIL 256 G P L V+D+DHFK++ND GHL GDEVL A I + + RA D R+GGEEF+++ Sbjct: 273 GTPL--CLAVIDLDHFKRINDEAGHLGGDEVLRTFARIAQDNVRAGDIFGRYGGEEFLLV 330 Query: 257 LRSTTLSDARKIFDRFRQNVQEY--DFPQVGKVTVSLGFV-GIARETPVVILGHADQALY 313 L T+L A + +R R+ V+ + D +VTVS+G I E+ + + D A+Y Sbjct: 331 LPDTSLLAALNVAERIREQVERFAWDKKLRNRVTVSIGLTQQIPGESVLDLFSRTDTAMY 390 Query: 314 HAKKSGRNRICYYQELVNAGV 334 AK+ GRN++ + +A + Sbjct: 391 MAKQGGRNQVVVEEPPADAAI 411 >gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [Herminiimonas arsenicoxydans] Length = 475 Score = 107 bits (268), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 94/185 (50%), Gaps = 25/185 (13%) Query: 147 QSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAPHEAHSLEENERRHEDHGEPKGHWLGV 206 + L + + RD LTG NR+ FDE F ++ FA+A + L + Sbjct: 302 RELEEKTHRDVLTGAHNRRYFDEAF-KHEFAVASRQGWPLS----------------VAF 344 Query: 207 VDIDHFKQVNDRYGHLYGDEVLILVANILRASFRAHDRIFRFGGEEFVILLRSTTLSDAR 266 +DIDHFKQVND YGH GD+ LI ++ I+ R D R+GGEEFV+L T +A Sbjct: 345 LDIDHFKQVNDTYGHAAGDKALIALSRIIATQIRGSDIFVRYGGEEFVLLFPGTVAEEAL 404 Query: 267 KIFDRFRQNVQEYDF---PQVGKVTVSLGFV-----GIARETPVVILGHADQALYHAKKS 318 + +R RQ V Y +T+S G + ET +L AD ALY AK++ Sbjct: 405 IVLNRIRQAVASYCHTYDTATFHLTISAGLAFHMDEDMKHETAEGLLRTADNALYTAKQN 464 Query: 319 GRNRI 323 GRN+I Sbjct: 465 GRNQI 469 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 103 bits (258), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 93/178 (52%), Gaps = 26/178 (14%) Query: 156 DALTGLFNRKTFDEQFTRYAFAIAPHEAHSLEENERRHEDHGEPKGHWLGVVDIDHFKQV 215 D+LTGL NR+ FD FA A SL L ++D+DHFK+ Sbjct: 350 DSLTGLANRRRFDAALDD-EFARAMRNQTSLA----------------LIMLDVDHFKKY 392 Query: 216 NDRYGHLYGDEVLILVANILR-ASFRAHDRIFRFGGEEFVILLRSTTLSDARKIFDRFRQ 274 NDRYGH GDE L ++ IL+ A+ R D + R+GGEEFVILL T + A + +R R Sbjct: 393 NDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPGTDRAGAAAVAERVRL 452 Query: 275 NVQEYDFPQV----GKVTVSLGFVGI----ARETPVVILGHADQALYHAKKSGRNRIC 324 +Q + G VT SLG + + +P ++ ADQALY AK+ GRN+ C Sbjct: 453 AIQALNMEHAETPDGIVTASLGIAALIPQRQQNSPQQLVHAADQALYKAKEDGRNQSC 510 >gi|134096466|ref|YP_001101541.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 492 Score = 100 bits (249), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 90/173 (52%), Gaps = 21/173 (12%) Query: 156 DALTGLFNRKTFDEQFTRYAFAIAPHEAHSLEENERRHEDHGEPKGHWLGVVDIDHFKQV 215 D LTGL NR+ F+ F ++ ++ERR P L DID FK V Sbjct: 326 DTLTGLLNRQAFEIVF-----------QQAILDSERRRI----PLSAIL--FDIDFFKMV 368 Query: 216 NDRYGHLYGDEVLILVANILRASFRAHDRIFRFGGEEFVILLRSTTLSDARKIFDRFRQN 275 ND +GHL GD +L +A I + + R D + R+GGEEF++LL+ L A + ++ R Sbjct: 369 NDNHGHLAGDRILQSIAAITKNAVRESDIVTRWGGEEFLVLLKDCPLEQATALAEKIRSM 428 Query: 276 VQEYDFPQVGK---VTVSLGFVGIA-RETPVVILGHADQALYHAKKSGRNRIC 324 + +DF +TVSLG A RET + G AD ALY AK GRNR+ Sbjct: 429 IAGHDFELPASALHLTVSLGVAEYAYRETWLSFFGRADTALYQAKSEGRNRVI 481 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.138 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 665,747 Number of extensions: 26594 Number of successful extensions: 154 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 107 Number of HSP's successfully gapped: 29 Length of query: 348 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 265 Effective length of database: 726,862 Effective search space: 192618430 Effective search space used: 192618430 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 129 (54.3 bits)