BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1258.p
         (317 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096441|ref|YP_001101516.1| putative ribonuclease RNase BN ...   343   6e-96
gi|134095695|ref|YP_001100770.1| ribonuclease [Herminiimonas ars...   250   7e-68

>gi|134096441|ref|YP_001101516.1| putative ribonuclease RNase BN
           (RBN) transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 298

 Score =  343 bits (880), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 173/274 (63%), Positives = 222/274 (81%), Gaps = 1/274 (0%)

Query: 9   QQAWQMTVAAIDAWITDFAPSMGAAIAYYTIFSIAPMLVIAIAVAGMLFGHDAAQGEIVN 68
           QQAW +T  A+ AW+ DFAPSMGAA+AYYTIFS+APML+I IA+AG  FG   AQGEI+ 
Sbjct: 7   QQAWSLTKEAVQAWVDDFAPSMGAALAYYTIFSLAPMLIIVIAIAGFFFGQTTAQGEIIL 66

Query: 69  QIRDIVGTEGAFAIQGLLRSVSQPREGMIAAGISVVTLVIGATAVFSELQSALDRIWRIP 128
           Q+R +VG  GA A++GLL+SVS+P +G+IAA + ++TL+IGATAVF ELQSALDRIW++P
Sbjct: 67  QLRGMVGDTGAAAVEGLLKSVSKPGQGIIAATLGILTLMIGATAVFGELQSALDRIWKVP 126

Query: 129 VVKRKSGVWQLARTRLLSFGLILGLGFLLIISLVVSAALAALGRWWGGWFEGWQLVLQLL 188
             + K G+W++ R RLLSFG+I+GLGF+L++SL++SAALAALG+WWG     W +VLQ+L
Sbjct: 127 P-EAKGGIWKMLRKRLLSFGMIMGLGFMLLVSLILSAALAALGKWWGDVLGTWNIVLQVL 185

Query: 189 NFVLSFVVFSTLFSMIYKFMPRVTLSWHDVWIGAVATTVLFIIGKYLIGLYLGSTGMTSG 248
           N  +SF V + LF++IYKFMPR T+ W DVW+GA  T +LF +GK+LIGLYLG T M SG
Sbjct: 186 NMAVSFGVVTALFALIYKFMPRATIPWRDVWVGAGVTALLFTLGKFLIGLYLGKTNMASG 245

Query: 249 FGAAGSFALLLLWIYYSAQIFLLGAEFTWIYANN 282
           FGAAGS  +LL WIYYSAQIFLLGAEFTW+++  
Sbjct: 246 FGAAGSLVILLAWIYYSAQIFLLGAEFTWVFSQR 279


>gi|134095695|ref|YP_001100770.1| ribonuclease [Herminiimonas
           arsenicoxydans]
          Length = 313

 Score =  250 bits (638), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 145/300 (48%), Positives = 205/300 (68%), Gaps = 9/300 (3%)

Query: 14  MTVAAIDAWITDFAPSMGAAIAYYTIFSIAPMLVIAIAVAGMLFGHDAAQGEIVNQIRDI 73
           + V ++  W      S GAA+A+YT+FS+AP+L++AIA+AG +FG  AA+GEI  Q+  +
Sbjct: 20  VVVCSMMEWFAQRGGSKGAAVAFYTLFSMAPILILAIAIAGAVFGAQAARGEIFAQLSGL 79

Query: 74  VGTEGAFAIQGLLRSVSQPREGMIAAGISVVTLVIGATAVFSELQSALDRIWRIPVVKRK 133
           VG  GA AI+ LL +   P  G+ A  I+ + L++GAT +F+EL+ +LD IW +P   R+
Sbjct: 80  VGPNGAQAIEMLLANAHNPHTGVTATLIATIILLVGATTIFAELKDSLDEIWHVPKA-RE 138

Query: 134 SGVWQLARTRLLSFGLILGLGFLLIISLVVSAALAALGRWWGGWFEGWQLVLQLLNFVLS 193
           SG  ++ R RLLSFGL+L L FLL++SL++SAALA L R+WGG ++    +L   + ++S
Sbjct: 139 SGWLEVLRVRLLSFGLVLVLAFLLLVSLIISAALALLERYWGGLWQDASFILTPASNIIS 198

Query: 194 FVVFSTLFSMIYKFMPRVTLSWHDVWIGAVATTVLFIIGKYLIGLYLGSTGMTSGFGAAG 253
           ++V + LF++IYK +P+V LSWHDV IG++ T  LFI GKYLIG+YLG++G+ S +GAAG
Sbjct: 199 YLVIACLFAVIYKTLPQVKLSWHDVAIGSLGTAALFIFGKYLIGVYLGNSGVASSYGAAG 258

Query: 254 SFALLLLWIYYSAQIFLLGAEFTWIYANNFGSRARRQKLVNTVQEHHVSLEQAQQVVRTD 313
           S   LLLW+YYSAQIF LGA FT  YA  FG+      L N V  H V  + A Q   +D
Sbjct: 259 SLVALLLWVYYSAQIFFLGASFTRQYALWFGT------LRNDVHAHDV--QAATQKTSSD 310


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 454,541
Number of extensions: 14349
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 235
Effective length of database: 730,157
Effective search space: 171586895
Effective search space used: 171586895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)