BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1255.p
         (545 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094252|ref|YP_001099327.1| putative DNA translocase ftsK 2...   697   0.0  

>gi|134094252|ref|YP_001099327.1| putative DNA translocase ftsK 2
           [Herminiimonas arsenicoxydans]
          Length = 777

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/498 (70%), Positives = 408/498 (81%), Gaps = 4/498 (0%)

Query: 49  DIPLPSLDLLDEVPESRIEIDPQQLEETGRLIEQRLREFKVPVTVLGAEAGPVITRFEVE 108
           D  LP L LLDE P+++  +  + LE T RLIE++L +F V   V+ A  GPV+TR+E++
Sbjct: 283 DTNLPPLSLLDEAPQAQETVSIETLEFTSRLIEKKLSDFGVMAKVVAAYPGPVVTRYEID 342

Query: 109 PAQGVRGAQVVNLMKDLSRALGLTSIRVVETIPGKTCMGLELPNARRQMIKLSEIVHSQA 168
           PA GV+G+Q+V L +DL+R+L LTSIRVVETIPGK  M LELPN +RQ+++L+EI+ S+ 
Sbjct: 343 PATGVKGSQIVGLARDLARSLSLTSIRVVETIPGKNYMALELPNPKRQIVRLTEIISSKV 402

Query: 169 YRKSASHLTIAMGKDITGTPVVTDLARAPHMLVAGTTGSGKSVAINAMILSLLYKATPEE 228
           Y  S S LT+A+GKDI G PVV DLA+ PH+LVAGTTGSGKSV INA ILSLLYK+ P +
Sbjct: 403 YNDSVSSLTVALGKDIAGNPVVADLAKMPHLLVAGTTGSGKSVGINATILSLLYKSDPNQ 462

Query: 229 VRLIMIDPKMLELSIYEGIPHLLAPVVTDMREAAHALNWAVEEMERRYKKMSKLGVRNLA 288
           VRLI+IDPKMLELSIYEGIPHLLAPVVTDMR+A HALNW V EMERRYK MSKLGVRNLA
Sbjct: 463 VRLILIDPKMLELSIYEGIPHLLAPVVTDMRQAGHALNWGVNEMERRYKLMSKLGVRNLA 522

Query: 289 GYNQKLDEAAARGEKIPNPFSLTLDAPEPLEKLPTIVIVIDELADLMMVVGKKVEELIAR 348
           GYN K+ EA    +KIPNPFSLT DAPEPLEKLPTIVI+IDELADLMMVVGKKVEELIAR
Sbjct: 523 GYNTKIAEAEKNEQKIPNPFSLTPDAPEPLEKLPTIVIIIDELADLMMVVGKKVEELIAR 582

Query: 349 LAQKARAAGIHLILATQRPSVDVITGLIKANIPTRVAFQVSSKIDSRTVLDQMGAESLLG 408
           +AQKARAAGIHLILATQRPSVDVITGLIKANIPTR+AFQVSSKIDSRT+LDQMGAE+LLG
Sbjct: 583 IAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQMGAEALLG 642

Query: 409 HGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEYLKSFGEPRYIEEILAPPISEDTAQADM 468
            GDML++PPG+G P RVHGAFVSDEEVHRVV++LKS GEP YIE IL   + ED    D+
Sbjct: 643 MGDMLYMPPGTGLPVRVHGAFVSDEEVHRVVDHLKSQGEPNYIEGILEGGVVED---GDL 699

Query: 469 -FAGGEGGDAESDPLYDEAVAFVLKTRRASISSVQRQLRIGYNRAARLVEQMETAGVLSA 527
                 G   E+D LYD+AVA VLK RRASIS VQR LRIGYNRAARL+EQME +G++S 
Sbjct: 700 TLGAEGGAGGEADALYDQAVAIVLKNRRASISLVQRHLRIGYNRAARLLEQMEQSGLVST 759

Query: 528 MSRNGSRDILVPPSGGEE 545
           M  NG+R+ILVP     E
Sbjct: 760 MQSNGNREILVPAGNATE 777


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,051,545
Number of extensions: 45076
Number of successful extensions: 217
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 459
Effective length of database: 716,977
Effective search space: 329092443
Effective search space used: 329092443
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)