BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1253.p (526 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 318 5e-88 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 315 3e-87 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 309 2e-85 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 306 2e-84 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 297 1e-81 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 318 bits (814), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 193/326 (59%), Positives = 240/326 (73%), Gaps = 2/326 (0%) Query: 191 RMQLTSL-VVVIAIGLSLFSWYIGRVLRSRVVQSQQVAQRVKDGDFTVEVRDDARDEFSP 249 RM L L +V + +G+ L +W + R + + + VA+ V GD T + D++DE Sbjct: 187 RMLLIVLGLVALTLGIVL-AWMLTRSITKPLDYAVSVARLVASGDLTGRITVDSKDETGQ 245 Query: 250 LLHTLGEMQTSLTGVVRSVRGNAEYVATASAEISKGNNDLAQRTESQASALEETAASMEE 309 LL L +M SLT + VR + +ATAS +I+ GN DL+ RTE QAS+LEETA+SMEE Sbjct: 246 LLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASSMEE 305 Query: 310 LSTTVTQNVDSAREADSLTKAASDIARKGGEVVSEVVQTMRNINESSKHIADIIGVIDGI 369 L++TV QN D+AR+A+ L AS +A KGG VVS+VV TM IN S++ I DIIGVIDGI Sbjct: 306 LTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVIDGI 365 Query: 370 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGRSAEAAKQIKGLITVSVERIEHG 429 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA RSA AAK+IK LI SV++++ G Sbjct: 366 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVDTG 425 Query: 430 TQLVDQAGQTMDEVVASVARVTDIMSRINEASVEQSAGVGQVSEAVTQMDQVTQQNAALV 489 ++LV +AG TM EVV SV RVTDIM+ I AS EQSAG+ QV++A+ QMDQVTQQNAALV Sbjct: 426 SKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALV 485 Query: 490 EQTAAAAESLKGQAQQLVNAMSVFKL 515 E+ AAAAESL QA L A+S+FKL Sbjct: 486 EEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 315 bits (808), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 198/381 (51%), Positives = 255/381 (66%) Query: 135 MALIRDGRTDDAMTMLEQKTAPAFAPLQKWLSEERARQGSSVGQEVLDIGNSANLMRMQL 194 +A +R GR ++ +L K P F L K E Q S D + R+ Sbjct: 134 IAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVELQMKSAATGYQDSQTLFHYFRIIA 193 Query: 195 TSLVVVIAIGLSLFSWYIGRVLRSRVVQSQQVAQRVKDGDFTVEVRDDARDEFSPLLHTL 254 V++ IG++++++++ R + + + + GD T + +R+E L+ L Sbjct: 194 VVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNIEVKSRNEMGTLMLGL 253 Query: 255 GEMQTSLTGVVRSVRGNAEYVATASAEISKGNNDLAQRTESQASALEETAASMEELSTTV 314 +MQ LT V VR + ++TA+ EI+ GN DL+ RTE QA++LEETA+SMEEL++TV Sbjct: 254 QKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELTSTV 313 Query: 315 TQNVDSAREADSLTKAASDIARKGGEVVSEVVQTMRNINESSKHIADIIGVIDGIAFQTN 374 QN D+AR+A+ L +AS +A KGG VVS+VV TM IN S++ I DIIGVIDGIAFQTN Sbjct: 314 KQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQTN 373 Query: 375 ILALNAAVEAARAGEQGRGFAVVASEVRSLAGRSAEAAKQIKGLITVSVERIEHGTQLVD 434 ILALNAAVEAARAGEQGRGFAVVASEVRSLA RSA AAK+IK LI SV +++ GT+LV Sbjct: 374 ILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLVA 433 Query: 435 QAGQTMDEVVASVARVTDIMSRINEASVEQSAGVGQVSEAVTQMDQVTQQNAALVEQTAA 494 +AG TM EVV SV RVTDIMS I AS EQSAG+ QV+ A+ QMD+VTQQNAALVEQ AA Sbjct: 434 EAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAAA 493 Query: 495 AAESLKGQAQQLVNAMSVFKL 515 AA SL+ QA L +SVFKL Sbjct: 494 AASSLRDQATNLSTVVSVFKL 514 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 309 bits (791), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 190/320 (59%), Positives = 240/320 (75%), Gaps = 6/320 (1%) Query: 200 VIAIGL-SLFSWYIGRVLRSRVVQSQQVAQRVKDGDFTVEVRDD---ARDEFSPLLHTLG 255 VIAI L +L +W + + + ++ +VA+ V +GD T R D +DE LL LG Sbjct: 197 VIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTA--RSDMAETQDEPGLLLSALG 254 Query: 256 EMQTSLTGVVRSVRGNAEYVATASAEISKGNNDLAQRTESQASALEETAASMEELSTTVT 315 MQ +L V +R + +ATAS+EI+ GN DL+ RTE QAS+LEETA+SMEEL++TV Sbjct: 255 RMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETASSMEELTSTVK 314 Query: 316 QNVDSAREADSLTKAASDIARKGGEVVSEVVQTMRNINESSKHIADIIGVIDGIAFQTNI 375 QN D++R+A+ L AAS +A KGG VVS+VV TM IN S+K I DIIGVIDGIAFQTNI Sbjct: 315 QNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIGVIDGIAFQTNI 374 Query: 376 LALNAAVEAARAGEQGRGFAVVASEVRSLAGRSAEAAKQIKGLITVSVERIEHGTQLVDQ 435 LALNAAVEAARAGEQGRGFAVVA+EVR+LA RSA AAK+IK LI SVE+++ G++LV + Sbjct: 375 LALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEKVDAGSKLVAE 434 Query: 436 AGQTMDEVVASVARVTDIMSRINEASVEQSAGVGQVSEAVTQMDQVTQQNAALVEQTAAA 495 AG TMDE+V V RV DIM+ I AS EQS G+ QV++AV+QMDQVTQQNAALVE+ AAA Sbjct: 435 AGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQNAALVEEAAAA 494 Query: 496 AESLKGQAQQLVNAMSVFKL 515 AESL+ QA+ L A+SVF++ Sbjct: 495 AESLQDQARNLAEAVSVFRV 514 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 306 bits (783), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 184/291 (63%), Positives = 223/291 (76%) Query: 225 QVAQRVKDGDFTVEVRDDARDEFSPLLHTLGEMQTSLTGVVRSVRGNAEYVATASAEISK 284 +VA+ V GD + ++ DE LL L +M L V VR E +ATAS +I+ Sbjct: 225 EVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAA 284 Query: 285 GNNDLAQRTESQASALEETAASMEELSTTVTQNVDSAREADSLTKAASDIARKGGEVVSE 344 GN DL+ RTE QAS+LEETA+SMEEL++TV QN D+AR+A+ L +AS +A KGG VVS+ Sbjct: 285 GNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQ 344 Query: 345 VVQTMRNINESSKHIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 404 VV TM +IN S+K I DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+L Sbjct: 345 VVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNL 404 Query: 405 AGRSAEAAKQIKGLITVSVERIEHGTQLVDQAGQTMDEVVASVARVTDIMSRINEASVEQ 464 A RSA AAK+IK LI SV++++ G++LV +AG TM+EVV SV RVTDIMS I AS EQ Sbjct: 405 AQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQ 464 Query: 465 SAGVGQVSEAVTQMDQVTQQNAALVEQTAAAAESLKGQAQQLVNAMSVFKL 515 SAG+ QV++A+ QMDQVTQQNAALVE+ AAAAESL QA +L A+SVFKL Sbjct: 465 SAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKL 515 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 297 bits (760), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 219/528 (41%), Positives = 318/528 (60%), Gaps = 33/528 (6%) Query: 4 ITKLSIGARLYGVSGLLIAALSALAITSWVQLSQVNQLAHRVGEVRVTQLALIASTELNL 63 + ++I + L V G+L L A I L N+ V E R + + +T + L Sbjct: 2 LKNITIKSLLLFVMGILSLLLIATGILGLTSLDTTNKALRSVYEDRTVPIGQL-NTVITL 60 Query: 64 TRV-MVDLRQALLVKDAAQIRAALADVDAMRKQITDNDNAYLKDVPTQEGR---DAF--D 117 + + +DL A + D + + ++ K+I +A++ T E + D F D Sbjct: 61 STINQLDL-AASIYGDPGLVIPKMDAIEKHSKEINQAFDAFMASTLTPEAKVLADKFAAD 119 Query: 118 RNWLKLQQVTWPVAEANMALIRDGRTDDAMTMLEQKTAPAFAPLQKWLSEERARQGSSVG 177 R L++ P A+ R G ++ P+++ ++ RA + + Sbjct: 120 RKIF-LEKALQPAIAAS----RGGNVLRVTEIVN-------GPMEELITPVRAGVAALID 167 Query: 178 QEVLDIGNSANLMRMQLTSLVVV--IAIGLSLF--------SWYIGRVLRSRVVQSQQVA 227 L++ + T V+V I+IG +F ++++ R++ + + Q+A Sbjct: 168 ---LELREAKKAFEESQTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIA 224 Query: 228 QRVKDGDFTVEVRDDARDEFSPLLHTLGEMQTSLTGVVRSVRGNAEYVATASAEISKGNN 287 + V GD T ++ ++ +E LL L +M SL+ V +VR E + AS EI+ GN Sbjct: 225 RSVAAGDLTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNA 284 Query: 288 DLAQRTESQASALEETAASMEELSTTVTQNVDSAREADSLTKAASDIARKGGEVVSEVVQ 347 DL+ RTE+QA +LEETA+SMEEL++TV QN D+AR+A+ L +A+++A KGG VVSEVV Sbjct: 285 DLSSRTEAQAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVI 344 Query: 348 TMRNINESSKHIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGR 407 TM +I +SS+ I DIIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LA R Sbjct: 345 TMGSIKDSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQR 404 Query: 408 SAEAAKQIKGLITVSVERIEHGTQLVDQAGQTMDEVVASVARVTDIMSRINEASVEQSAG 467 SA AAK+IK LI SV +++ G++LVDQAG TM E+V SV V DIMS I AS EQS G Sbjct: 405 SAGAAKEIKALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDG 464 Query: 468 VGQVSEAVTQMDQVTQQNAALVEQTAAAAESLKGQAQQLVNAMSVFKL 515 + QV++A++QMD++TQQNAALVEQ AAAA+S++ QA +L A+++FKL Sbjct: 465 IEQVNQAISQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKL 512 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 696,460 Number of extensions: 23229 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 136 Number of HSP's successfully gapped: 14 Length of query: 526 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 440 Effective length of database: 716,977 Effective search space: 315469880 Effective search space used: 315469880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)