BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1251.p
         (240 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094118|ref|YP_001099193.1| putative protein translocase su...   340   5e-95

>gi|134094118|ref|YP_001099193.1| putative protein translocase
           subunit [Herminiimonas arsenicoxydans]
          Length = 231

 Score =  340 bits (871), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 167/231 (72%), Positives = 188/231 (81%)

Query: 1   MHLDQPLSDAEFDELDDFLLSDRCADDVMTMDTLHGYLTALAIGPQEVLMAEWLPRVWGS 60
           MHLDQPLSD EFDELD FLLSDR ADD M MD+LHGYLTAL +GP+EV +AEWLP VWG 
Sbjct: 1   MHLDQPLSDKEFDELDKFLLSDRTADDCMAMDSLHGYLTALVVGPEEVPLAEWLPHVWGE 60

Query: 61  RPEDTPKFKNGKEAERITSLIARSMNEIAITFEVAPKEYEPLFCEREHEGKPLLDAEAWA 120
             E  PKFKN KE ERI  LIAR MNEIAIT EVAPKEYEPLFCE E EGKP+LD EAWA
Sbjct: 61  NAEAVPKFKNDKEYERIVGLIARFMNEIAITLEVAPKEYEPLFCEHEWEGKPVLDGEAWA 120

Query: 121 WGFWEGIQLRAAQWDEIFHSNLAPLMRPIYLLGSDELEEEETKLIDDPIKTHKLAIEIEA 180
           WGF  G+ LRA  W+ I  SN+APLMRPIYLLG++E+EEEE  L+D+P+K HKL IEIEA
Sbjct: 121 WGFNLGMSLRAEAWEPIHTSNIAPLMRPIYLLGAEEIEEEELVLVDNPVKCHKLTIEIEA 180

Query: 181 AIPHIHRYWAPKRKSAVEQVQRDAPKTGRNDPCPCGSGKKYKKCCGADSAD 231
           AIP IH++W P RKSAV+ VQR+ PK GRND C CGSGKK+KKCCGA+S +
Sbjct: 181 AIPEIHKFWLPHRKSAVKTVQRETPKVGRNDECSCGSGKKFKKCCGAESTE 231


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 397,398
Number of extensions: 14481
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 161
Effective length of database: 740,042
Effective search space: 119146762
Effective search space used: 119146762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)