BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1250.p
         (189 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094115|ref|YP_001099190.1| oligoribonuclease [Herminiimona...   337   2e-94

>gi|134094115|ref|YP_001099190.1| oligoribonuclease [Herminiimonas
           arsenicoxydans]
          Length = 198

 Score =  337 bits (864), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 155/184 (84%), Positives = 169/184 (91%)

Query: 6   AAPVRPNEMNLVWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSDELLDG 65
            APVRPNE NLVW+DMEMTGLD D D IIE+AVVVTDAELN++GEGPV AIHQSDE LD 
Sbjct: 15  TAPVRPNEFNLVWLDMEMTGLDCDNDCIIEIAVVVTDAELNIIGEGPVFAIHQSDETLDK 74

Query: 66  MDAWNKGTHGRSGLIDRVKASTVTEADAEQQIIAFLKQYVPAGKSPMCGNSICQDRRFMV 125
           MDAWNKGTHGRSGLI+RVKASTV+EA AE+++I FLK+YVP GKSPMCGNSICQDRRFM 
Sbjct: 75  MDAWNKGTHGRSGLIERVKASTVSEAQAEEELIEFLKKYVPKGKSPMCGNSICQDRRFMA 134

Query: 126 RGMPKLEEFFHYRNLDVSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELKYYREH 185
           RGMPKLE FFHYRNLDVSTLKELCKRWKPE+A+GFKK Q HTALADI+ESIEEL+YYREH
Sbjct: 135 RGMPKLEAFFHYRNLDVSTLKELCKRWKPELASGFKKHQKHTALADIIESIEELRYYREH 194

Query: 186 FIKE 189
           FIKE
Sbjct: 195 FIKE 198


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 370,175
Number of extensions: 14371
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 112
Effective length of database: 746,632
Effective search space: 83622784
Effective search space used: 83622784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)