BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1248.p
         (118 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094113|ref|YP_001099188.1| putative pterin-4-alpha-carbino...   142   6e-36

>gi|134094113|ref|YP_001099188.1| putative
           pterin-4-alpha-carbinolamine dehydratase [Herminiimonas
           arsenicoxydans]
          Length = 117

 Score =  142 bits (357), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 81/109 (74%)

Query: 4   TASTLAAARCIQPIEALDDAAIASHLAALPDWKIDDGKLARTFAFSNYYQTLAFVNAMAW 63
            A+ L   +C  P +AL+   IA  L A+  W++ DGK+ R + F NYY T+AFVNA+ +
Sbjct: 3   NAADLRQQKCQPPTKALNAEEIAQRLQAVAAWRLQDGKIFREYTFKNYYATMAFVNAIVY 62

Query: 64  IIHAEDHHPELVVTYNRCQVKFDTHSVNAGRGGLSANDFICAAKVDALF 112
           +IHAEDHHPELV+TY  C V+++THSVN G+GGLS NDFICAAK+DA+F
Sbjct: 63  VIHAEDHHPELVITYKHCTVRYNTHSVNEGKGGLSDNDFICAAKLDAIF 111


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.131    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 222,599
Number of extensions: 7785
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 1,000,347
Length adjustment: 71
Effective length of query: 47
Effective length of database: 766,402
Effective search space: 36020894
Effective search space used: 36020894
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)