BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1246.p (720 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 182 4e-47 gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 160 3e-40 gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 123 3e-29 gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [... 74 3e-14 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 182 bits (463), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 203/795 (25%), Positives = 332/795 (41%), Gaps = 111/795 (13%) Query: 1 MSHSQIHRSRPVLR--TLPAALMAALCTLPVQAAEGGAEREDNPAPRLPAVEVRG--QRN 56 M+H + R P R + A+ A LP G LP VEV G + Sbjct: 1 MAHIK-SRKHPAARRSSCSTAVAMAFVVLP-----GTTVYAQQVTSVLPEVEVHGTTESY 54 Query: 57 HADPRPGPLGSATRTATDPR-EVPQTLQAVEVEQVKAYGGRGLAAALAGVPGI------S 109 AD P T P QT+ ++ E V+ GG L AL PG+ Sbjct: 55 KADTVSSP------KFTQPLLNTTQTITVIKKELVQQQGGATLTEALRNTPGVGTFSLGE 108 Query: 110 NVSDTRFDAFRIRGFSNAGDTLLDGIRDDAQYVRSLGNIERIEILKGPAAVLYGRGSGGG 169 N + DA +RGF + +DG+RD R + NIE+IE+ KGPA GRGS G Sbjct: 109 NGNTNTGDAIYMRGFDTSSSIFVDGVRDLGSISRDIFNIEQIEVTKGPAGADTGRGSPTG 168 Query: 170 VINRISKEPG-REAFSQASLTWGSYGLQGAAIDWNRPLGEQW--ALRIN--------AGR 218 IN +K+P +EA+S S++ GS + D N+PL A RIN AGR Sbjct: 169 SINLSTKQPTMKEAYS-GSVSVGSGDYKRITADLNKPLDFDGGAAFRINLLKDDSGVAGR 227 Query: 219 EHEANFRNEVRGTRQYFAPTLKWESGRDSWLLQANYDEFERTPDRGVP--------AQVT 270 + +N+ +G FA LK + ++L + D+ PD GVP + V Sbjct: 228 DI---VKNDRQGIAAAFAFGLKTNT--RTYLNYLHVDQ-SNIPDGGVPTIGLPGYSSPVQ 281 Query: 271 ALTRNATASAYALPV---------ASDHSFFGAAGRDFIRDSSLSLRSTITRAIAADWSV 321 A AT A+P + +F+G G DF ++ L + + I+ D + Sbjct: 282 AANPAATPPVVAIPARPFLNGASRVNSSNFYGTVG-DFDDVTADMLTARVEHDISPDVKL 340 Query: 322 RQVVSVFDLNSDFDNTFVSQPFVTAGRNLR----------GVQRSRFLQNLQHRNVQANL 371 + + + ++ F+ + NL + RS +++ + Sbjct: 341 QNTTRFGKTSQN----YLLTGFMGSAPNLLTPNPADPTTWTLARSSQMKDQTNEIFSNQT 396 Query: 372 EVLGTLAAGGMQHQLLAGAEYGWQKREPRLW--MGSAIPVSLINPDNR-NHIGSMPEPWQ 428 + G ++H L+ G E +K+ + +G+ +L NP+ G P Sbjct: 397 NLTAKFDTGAVKHSLVTGVELSSEKQRSLGYAGLGTISAANLYNPNPYLVRTGYNPVGNG 456 Query: 429 MNYH-KVNTTGLYAQDQIELGTHWKVLAGLRWDHFEVDSRSRLRKLRS---ERSTNALSP 484 N + NT +Y D +EL W++ G+R DH++ S +R+ +S L+ Sbjct: 457 TNSEGRTNTLSVYLFDTLELSPQWQINGGVRVDHYDTKYESSTLNVRNATLNKSGTLLNW 516 Query: 485 RIGAVWEALPDQHVYASWSKNYAPVGGDVIGITPGASGNAN-DLGPQFSRQLEVGVKSDW 543 ++G +++ D +Y S++ + P GG ++ A+ AN + PQ +R E+G K D Sbjct: 517 KLGGLYKPTEDSSLYVSYATSKQPPGGSNFALSSNANSAANVNYDPQETRTAEIGAKWDL 576 Query: 544 FQRRISTTLAWFQLELYNRTVADPVQPGVFSQTGQERNRGIELSVAGELASHWFLRGGWT 603 +R+ T A ++ ++ N + F+QTG++R G+EL V GE+ S W + G+T Sbjct: 577 LDKRLGLTTAIYRTDVKNEIEGNATDG--FTQTGKKRVEGVELGVVGEITSAWQVSAGYT 634 Query: 604 HQNARVLQAEAQFTGKRPSGVSARNGSLFVSYAPPQGWFGETG-------VVVEGARFAD 656 V + ++G+ +SY P Q + T + GARF D Sbjct: 635 RMRTDVTAG----------AIVNQDGTSGLSYTPKQAFTAWTTYKLPGGFTIGGGARFVD 684 Query: 657 -----RDNLLELPGYAR----WDALLGYRLER-AEFTLAATNLTNRRYYASATGVS-QIV 705 +D + P + +DA+ Y + + L NL ++ Y AS + Sbjct: 685 ALHKPKDGAVGTPQFVESYWVYDAMASYEVSKNVSLQLNLYNLADKDYVASINKSGYRYT 744 Query: 706 PGAPRALVFTAAYKF 720 PG R+ +A KF Sbjct: 745 PGIERSARLSANIKF 759 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 160 bits (404), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 205/756 (27%), Positives = 317/756 (41%), Gaps = 99/756 (13%) Query: 19 ALMAALCTLPVQA------AEGGAEREDNPAPR----------LPAVEVRGQRNHADPRP 62 A++ AL +PV A GG+ + +PA + LPAV V G + A Sbjct: 15 AVLVALA-IPVAAHSQVVGLNGGSSLQASPASQNESSAPAVTTLPAVNVSGVQETA---T 70 Query: 63 GPL--------GSATRTATDPREVPQTLQAVEVEQVKAYGGRGLAAALAGVPGISNVS-- 112 GP+ +AT+T T E Q + V +Q+ G L AL G+ + + Sbjct: 71 GPVIGYRATRSSTATKTDTSLAETLQAVTVVTRDQIVDQGATNLQDALTYAAGVRSDAYG 130 Query: 113 -DTRFDAFRIRGFSNAGDTLLDGIRDDAQYVRSLG-----NIERIEILKGPAAVLYGRGS 166 D+R D+ +RG S D +DG+R Y S +ERIE+L+GPAA+ YG+GS Sbjct: 131 LDSRTDSVLVRGASP--DVYIDGLRQANDYYTSAARPDPFTLERIEVLRGPAAMSYGQGS 188 Query: 167 GGGVINRISKEPGREAFSQASLTWGSYGLQGAAIDWNRPLGE--QWALRINAGREHEANF 224 GGV+N +SK P E + + G++G + D PL E QW R+ A + Sbjct: 189 TGGVVNLVSKRPQAEFQGEVGVQLGNFGRKQLQADVTGPLTEDKQWLYRLVAVARNADTQ 248 Query: 225 RNEVRGTRQYFAPTLKWE-SGRDSWLLQANYDEFERTPDRGVPAQVTALTRNATASAYAL 283 + V+ R AP+L W+ +G S LQ Y + +RT G +Q T + + Sbjct: 249 VDYVKDDRTLIAPSLTWKPNGVTSLTLQGLY-QRDRT---GSTSQFLPWAGMLTPNVNGM 304 Query: 284 PVASDHSFFGAAGRDFIRDSSLSLRSTITRAIAADWSVRQ----VVSVFDLNSDFDNTFV 339 S F G G + D SL + +W+ RQ V+ D + + ++F Sbjct: 305 IPTS--RFIGEPGDRYDTDRQ-SLGYLFEHQLNDNWTFRQNFRYAVNEVDYFTHYADSFS 361 Query: 340 SQPFV---------TAGRNLRGVQRSRFLQNLQHRNVQANLEVLGTLAAGGMQHQLLAGA 390 + P + L G + ++ + +L+ L G +QH LLAG Sbjct: 362 TDPSTGLPGGWAIDPVNQRLIGRYADDSITKVKIATIDQHLQ--AKLQTGPLQHDLLAGL 419 Query: 391 EYGWQKREPRLWMGSAIPVSLINPDNRNH-IGSMPEPWQMNYHKVNTTGLYAQDQIELGT 449 +Y +R+ + G + + P N + ++ + Q ++ GLY QDQI++G Sbjct: 420 DYTRYQRDRQSGFGMDT-IDVYAPVYGNGVVATLADDPQSVQRQI---GLYLQDQIKIGK 475 Query: 450 HWKVLAGLRWDHFEVDSRSRLRKLRSERSTNALSPRIGAVWEALPDQHVYASWSKNYAPV 509 +W V AGLR D + L E S A + R+G ++ Y S+S+++ PV Sbjct: 476 NWIVSAGLRHDRVN----NALAGSEDEES-RATTKRVGVMYLLENGWSPYVSYSESFTPV 530 Query: 510 GGDVIGITPGASGNAND--LGPQFSRQLEVGVKSDWFQRRISTTLAWFQLELYNRTVADP 567 G NA D P Q+E GVK T A ++++ N++ DP Sbjct: 531 AGT----------NAYDQRFKPVRGEQIEGGVKYMPVNGHSQFTAAIWKIDEKNKSTTDP 580 Query: 568 VQPGVFSQTGQERNRGIELSVAGELASHWFLRGGWTHQNARVLQAEAQFTGKRPSGVSAR 627 P Q GQ +NRG+EL + + H N L + + P +A Sbjct: 581 SNPLNQIQVGQTKNRGVELEWKASITPTIDV---LAHYNYTDLDEQLD---EVPRHQAAA 634 Query: 628 NGSLFVSYAPPQGWFGETGVVVEGARFAD--RDNLL-ELPGYARWDALLGYRLERAEFTL 684 G S G+ + GAR+ RD + P DALL + + L Sbjct: 635 WGKWRFSIGGVSGF-----ALGAGARYMSSFRDGVAPTTPSVTLLDALLSWDTMNWRYAL 689 Query: 685 AATNLTNRRYYASATGVSQIVPGAPRALVFTAAYKF 720 NLT++ Y A+ GA R+ V TA YKF Sbjct: 690 NVNNLTDKVYNATCLSRGDCWYGARRSAVLTATYKF 725 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 162/702 (23%), Positives = 278/702 (39%), Gaps = 105/702 (14%) Query: 76 REVPQTLQAVEVEQVKAYGGRGLAAALAGVPGISNVSDT--RFDAFRIRGFS--NAGDTL 131 RE P ++ + EQ++ R A+ + N + D F IRGF+ + Sbjct: 63 RETPASISVITHEQMQDRSIRSATDAVKYDASVQNAYNAVGLADWFSIRGFTLDMGSNYR 122 Query: 132 LDGIRDDAQYVRSLGNIERIEILKGPAAVLYGRGSGGGVINRISKEPGREAFSQASLTWG 191 DG+ A + + N ER E+LKG A + G S GG++N + K P E +L Sbjct: 123 KDGMVVLAHSMIPMENKERFEVLKGLAGLQVGMASSGGILNYVVKRPTNEPLRSVTLEAS 182 Query: 192 SYGLQGAAIDW-NRPLGEQWALRINAGREHEANFRNEVRGTRQYFAPTLKWESGRDSWLL 250 G A+D R +++ RINA ++ G RQ+ + W + LL Sbjct: 183 ERGTLYGAVDLGGRSDDKRFGYRINAAGADIKSYVQGSNGERQFVSGAFDWRLSPKA-LL 241 Query: 251 QANYDEFERT-----------PDRGVPAQVTALTRNATASAYALPVASD----------- 288 Q + D ++ P + +P V+A T +++LPV D Sbjct: 242 QIDLDYHHKSQLSVPGFQLLGPAQRIPTGVSAKTM-LNNQSWSLPVTDDTNNLGIKFEYE 300 Query: 289 -----HSFFGAAGRDFIRDSSLSLRS-TITRAIAADWSVRQVVSVFDLNSDFDN-TFVSQ 341 H+ A + RD +++L S + ++ + +++DL D D T +S Sbjct: 301 LNEQWHTTLQANKFELRRDDAVALASGCVAEGLSPGYCADGTFNMYDLRRDNDKRTVMST 360 Query: 342 PFVTAGRNLRGVQRSRFLQNLQHRNVQANLEVLGTLAAGGMQHQLLAGAEYGWQKREPRL 401 + G+ G + + N + N +AG G+ Y + K P L Sbjct: 361 QAMLQGKFNAGTIKHDLTLGMSTMNRRDNYANFLFESAG-------TGSIY-YPKYNP-L 411 Query: 402 WMGSAIPVSLINPDNRNHIGSMPEPWQMNYHKVNTTGLYAQDQIELGTHWKVLAGLRWDH 461 +G PVSL D + + QD + L +K+ AG+R+ Sbjct: 412 TLGPTNPVSLRRKDEERSV-------------------FVQDVLTLNDKFKLHAGMRYTQ 452 Query: 462 FEVDSRSRLRKLRSERSTNALSPRIGAVWEALPDQHVYASWSKNYAPVGGDVIGITPGA- 520 + + L + L P + V+ + +Y ++S+ G+ PGA Sbjct: 453 LQRTQFTSSGGLFRHTDKDFLLPNVALVFSPQSNWSIYGTYSQ----------GLEPGAE 502 Query: 521 --SGNAND---LGPQFSRQLEVGVKSDWFQRRISTTLAWFQLELYNRTVADPVQPGV-FS 574 SG N+ L P SRQ+E+G+K+D Q IS A FQ+ N + G+ + Sbjct: 503 VPSGLVNEETVLDPNKSRQVEIGIKADLSQ-DISVAAALFQIHRDNNYTS-----GLNYV 556 Query: 575 QTGQERNRGIELSVAGELASHWFLRGGWTHQNARVLQA-EAQFTGKRPSGVSARNGSLFV 633 G+E +RG+ELS G + L T A +A+ GKR V ++F+ Sbjct: 557 TAGKEVHRGLELSAQGRATRNLTLGASMTTLQAFAENTGDARVEGKRIGNVPVLKSAVFM 616 Query: 634 SYAPPQ--------GW-FGETGVVVEGARFADRDNLLELPGYARWDALLGYRLE----RA 680 Y PQ W + + V A+ ++ + ++ GY + Y+ + + Sbjct: 617 DYTLPQMPALKLNAMWIYSSSKVFAPNAQISELNK--KVDGYHVLNVGAQYKTKVSGTKT 674 Query: 681 EFTLAATNLTNRRYYASATGV--SQIVPGAPRALVFTAAYKF 720 F N+ ++ Y+ A+ ++PGAPR +A + F Sbjct: 675 TFRFGIDNVFDKFYWGDASNAYGGYLIPGAPRVFRLSAQFDF 716 >gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [Herminiimonas arsenicoxydans] Length = 651 Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 174/745 (23%), Positives = 294/745 (39%), Gaps = 149/745 (20%) Query: 17 PAALMAALCTLPVQAAEGGAEREDNPAPRLPAVEVRGQRNHADPRPGPLGSATRTATDPR 76 P AL++AL TL A A+ E +L V V R + P+G+ TA Sbjct: 15 PLALVSALATLTFPAV---AQVE--TGQQLTPVTVSASR--FESAEAPIGATVITA---- 63 Query: 77 EVPQTLQAVEVEQVKAYGGRGLAAAL---AGVPGISNVSDTRFDAFRIRGFSNAGD---- 129 +Q++ G + A+ AGV G ++ S T + +RGF ++ + Sbjct: 64 -----------QQIRDSGAGSINEAIRKIAGVFGRASQSGTSDSSLDLRGFGSSSNQNVA 112 Query: 130 TLLDGIRDDAQYVR-------SLGNIERIEILKGPAAVLYGRGSGGGVINRISKEPGREA 182 +DGIR ++ ++ ++ERIE+++G ++VLYG G+ GG I I+K Sbjct: 113 IFVDGIRISENELQPAVMSAIAIESVERIEVVRGGSSVLYGEGATGGTIQIITKRGS--- 169 Query: 183 FSQASLTWGSYGLQGAAI------DWNRPLGEQW---ALRINAGREHEANFR--NEVRGT 231 T G++G A I + L W ++ N G N+R NE+R Sbjct: 170 ------TKGTHGSVVAEIGNRGHEEIRASLNAGWDGFSIDANLGALRTDNYRANNELR-- 221 Query: 232 RQYFAPTLKW--ESGRDSWLLQANYDEFERTPDRGVPAQVTALTRNATASAYALPVASDH 289 ++ F+ ++W ++G+ + + + + R P +Q R + SD Sbjct: 222 QENFSGGVQWALQNGKVGFRVDSARQDL-RLPGSLTLSQYLQNPRQTLKPTENGSLDSDR 280 Query: 290 SFFGAAGRDFIRDSSLSLRSTITRAIAADWSVRQVVSVFDLNSDFDNTFVSQPFVTAGRN 349 F F+ +L +AAD S R+ S D Sbjct: 281 YTF------FVDQRYGNLE------LAADLSYREKTSKGDF------------------- 309 Query: 350 LRGVQRSRFLQNLQHRNVQANLEVLGTLAAGGMQHQLLAGAEYGWQKREPRLWMGSAIPV 409 S FL N + Q + G +++L+ G ++ KR + A Sbjct: 310 ------SGFLSNAESEVKQFSPRAKYVSNFGSTRNELIVGMDFSDSKRFTQSSFNGAA-- 361 Query: 410 SLINPDNRNHIGSMPEPWQMNYHKVNTTGLYAQDQIELGTHWKVLAGLRWDHFEVDSRSR 469 N D SM +Y +++I G + +V AG R + F+ D R+ Sbjct: 362 ---NADEHTSQQSMA--------------IYGRNEIRFG-NMRVAAGARHEKFDQDLRAG 403 Query: 470 LRKLRSERSTNALSPRIGAVWEALPDQHVYASWSKNY--APVGGDVIGITPGASGNANDL 527 +S S NA + A +E P ++ K+Y A V + P L Sbjct: 404 TSYNQS-FSLNAFD--LNASYELTPLVSLFGKAGKSYRVANVDENAFLSKP--------L 452 Query: 528 GPQFSRQLEVGVKSDWFQRRISTTLA-WFQLELYNRTVADPVQPG-VFSQTGQERNR--G 583 PQ S LE+G F + +A F+ +L + DP G V + +R + G Sbjct: 453 NPQRSNDLELG---GLFGNDNNKLIAKVFRHKLKDEIFYDPTAGGGVGANVNLDRTKRQG 509 Query: 584 IELSVAGELASHWFLRGGWTHQNARVLQAEAQFTGKRPSGVSARNGSLFVSYAPPQGWFG 643 +E+ L+S +FL H +A+ + +GK V ++ +++ + Sbjct: 510 VEIEGRARLSSEFFLSAVLQHVSAKF--TDGPNSGKEMVLVPKNTATVRLNWKADK-QTA 566 Query: 644 ETGVV-VEGARFA-DRDNLL--ELPGYARWDALLGYRLERAEFTLAATNLTNRRYYASAT 699 + GV V+ R+ D N +P +A DA R+ EF ++ TNLT++ YY+ A Sbjct: 567 DVGVQWVDTQRYGKDVSNSCTARIPSFATLDARYAVRVGAWEFAVSGTNLTDKDYYSQAF 626 Query: 700 GVSQ----IVPGAPRALVFTAAYKF 720 G I P A R++ F+A F Sbjct: 627 GDCSNNRGIYPDAGRSVKFSARLNF 651 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.133 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,417,857 Number of extensions: 59608 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 4 Length of query: 720 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 632 Effective length of database: 710,387 Effective search space: 448964584 Effective search space used: 448964584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)