BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1244.p
         (444 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094110|ref|YP_001099185.1| argininosuccinate synthase [Her...   780   0.0  

>gi|134094110|ref|YP_001099185.1| argininosuccinate synthase
           [Herminiimonas arsenicoxydans]
          Length = 445

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/445 (84%), Positives = 408/445 (91%), Gaps = 1/445 (0%)

Query: 1   MSNILQSVPVNQKVGIAFSGGLDTSAALTWMRQKGAVPYAYTANLGQPDEPDYDAIPKKA 60
           MSNILQSVPVNQKVGIAFSGGLDTSAAL WMRQKGA+PYAYTANLGQPDE DY+AIP+KA
Sbjct: 1   MSNILQSVPVNQKVGIAFSGGLDTSAALHWMRQKGAIPYAYTANLGQPDETDYNAIPEKA 60

Query: 61  MQYGAEQARLIDCREQLANEGIAALQSGAFHISTAGVTYFNTTPLGRAVTGTMLVAAMRE 120
             YGAE ARLIDCREQL  EGIAALQSGAFHISTAGVTYFNTTPLGRAVTGTMLVAAM+E
Sbjct: 61  KAYGAELARLIDCREQLVAEGIAALQSGAFHISTAGVTYFNTTPLGRAVTGTMLVAAMKE 120

Query: 121 DNVDIWGDGSTYKGNDIERFYRYGLLVNPNLKIYKPWLDSTFIDELGGRKEMSEFMIKSG 180
           DNVDIWGDGST+KGNDIERFYRYGLL+NP L+IYKPWLD  FI+ELGGRKEMSEF+IKSG
Sbjct: 121 DNVDIWGDGSTFKGNDIERFYRYGLLMNPALRIYKPWLDDAFINELGGRKEMSEFLIKSG 180

Query: 181 FDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSGIKIVQPIMGVAFWRDEVEVKAETVTVR 240
           FDYKMS EKAYSTDSN+LGATHEAKDLE L+SG++IV+PIMGVAFWRD+VEVK ETVTVR
Sbjct: 181 FDYKMSTEKAYSTDSNILGATHEAKDLEELSSGMQIVEPIMGVAFWRDDVEVKRETVTVR 240

Query: 241 FEEGRPVALNGKTFASMTELILEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGLALL 300
           FEEGRP+ALNG  +  + EL+LEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGLALL
Sbjct: 241 FEEGRPIALNGVVYTDLVELMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGLALL 300

Query: 301 FIAYERLVTGIHNEDTIEQYRDNGRKLGRLLYQGRWFDSQAIMLRETAQRWVARAITGEV 360
           FIAYERL+TGIHNEDTIEQYR++GR+LGRLLYQGRWFD QAIMLRE AQRWVARAITGEV
Sbjct: 301 FIAYERLITGIHNEDTIEQYRESGRRLGRLLYQGRWFDPQAIMLREAAQRWVARAITGEV 360

Query: 361 TVELRRGNDYSILNTESPNLTYHPERLTMEKGEGS-FSAIDRIGQLTMRNLDIADTRQKL 419
           T+ELRRGNDYSILNT S NLTY PERL+MEK E + FS  DRIGQLTMRNLDI DTR KL
Sbjct: 361 TIELRRGNDYSILNTVSANLTYAPERLSMEKVEDAPFSPADRIGQLTMRNLDITDTRHKL 420

Query: 420 SIYQNTGLLDTSTAVSLPLLGKDEK 444
           +IY + GLL  +++V+LP   KD+K
Sbjct: 421 AIYSSAGLLTGNSSVALPSFEKDKK 445


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 848,020
Number of extensions: 35896
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 359
Effective length of database: 720,272
Effective search space: 258577648
Effective search space used: 258577648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)