BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1242.p
         (343 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094105|ref|YP_001099180.1| UDP-N-acetylenolpyruvoylglucosa...   471   e-134

>gi|134094105|ref|YP_001099180.1|
           UDP-N-acetylenolpyruvoylglucosamine reductase
           [Herminiimonas arsenicoxydans]
          Length = 322

 Score =  471 bits (1212), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/322 (70%), Positives = 262/322 (81%)

Query: 22  IEAHAHAYLPVEGVESLRTLRQDAALMALPRLVLGGGSNLLLTQDFSGLVLHMQGRGIEI 81
           +EA AHAYLPV    +L T+++DA L ALPRL+LGGGSN+LLT+DF GLVLHM+ RGIEI
Sbjct: 1   MEARAHAYLPVTSAGALETVQRDAGLAALPRLILGGGSNILLTRDFPGLVLHMENRGIEI 60

Query: 82  TGEDENFTYVRAAAGENWHAFVQWTLQQGLGGLENLSLIPGSVGAAPIQNIGAYGIEIKD 141
            GEDE+ TYVRAAAGENWH FV WTL  GLGGLENLSLIPGSVGAAPIQNIGAYGIE+KD
Sbjct: 61  VGEDEDATYVRAAAGENWHQFVLWTLAHGLGGLENLSLIPGSVGAAPIQNIGAYGIELKD 120

Query: 142 RFHSLRAFDLVSGELLTLDRDACLFGYRDSIFKHELRERAVVLEVSFALPKRWQANANYA 201
           RFH+L  FD  +GE  TL++  C+FGYRDS+FKH LR+RA VL+V+FALPK+WQA   YA
Sbjct: 121 RFHALTLFDFATGERTTLNKAECMFGYRDSVFKHRLRDRAAVLDVTFALPKKWQAAIRYA 180

Query: 202 DVAQALQERGITEPGPRDIAEAVIAIRTRKLPDPAKIGNAGSFFKNPIVPARLRDTLLAQ 261
           DV+  L  R I EP    I++AVIAIRTRKLPDPA IGNAGSFFKNP+V A+ RD LL +
Sbjct: 181 DVSNELAARKIVEPTAGQISDAVIAIRTRKLPDPAVIGNAGSFFKNPLVTAKQRDALLTK 240

Query: 262 YANLVSYRVDDEHYKLAAGWLIDRCGWKGRNMGRAGVYEQQALVLVNRGGATGAEVARLA 321
           Y  LVSY   D   KLAAGWLID+CGWKGR  G AGVYE QALVLVNRGGA+GA++A+LA
Sbjct: 241 YPQLVSYAQPDGSVKLAAGWLIDQCGWKGRTAGAAGVYENQALVLVNRGGASGADIAQLA 300

Query: 322 QAIQEDVKEKFGVQLEPEPVFI 343
            AIQEDV ++F V LEPEP+F+
Sbjct: 301 NAIQEDVAQRFDVMLEPEPIFL 322


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 684,465
Number of extensions: 29652
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 261
Effective length of database: 730,157
Effective search space: 190570977
Effective search space used: 190570977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)