BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1240.p
         (357 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094102|ref|YP_001099177.1| phospho-2-dehydro-3-deoxyhepton...   639   0.0  

>gi|134094102|ref|YP_001099177.1| phospho-2-dehydro-3-deoxyheptonate
           aldolase [Herminiimonas arsenicoxydans]
          Length = 354

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/349 (87%), Positives = 323/349 (92%)

Query: 1   MPRTDDLRIREMKELVPPSHLIREFACTEKVERTTAEARTALHRILHGQDDRLMVVIGPC 60
           MPRTDDLRI+EMKEL PPSHLIRE   +EK E T A+AR ALHRILHGQDDRLMVVIGPC
Sbjct: 1   MPRTDDLRIKEMKELTPPSHLIRELGISEKAETTVADARIALHRILHGQDDRLMVVIGPC 60

Query: 61  SIHDTKAAMEYARRLVVERERHKNELEIVMRVYFEKPRTTVGWKGLINDPYMDNSFRIND 120
           SIHDT AAMEYA RLV ER R   ELEIVMRVYFEKPRTTVGWKGLINDPYMDNSFRIN+
Sbjct: 61  SIHDTTAAMEYANRLVKERARFAGELEIVMRVYFEKPRTTVGWKGLINDPYMDNSFRINE 120

Query: 121 GLRAARELLLNINELGLPAGTEFLDVISPQYIADLISWGAIGARTTESQVHRELASGLSC 180
           GL  ARELLLNINELGLPAGTEFLDVISPQYIADLISWGAIGARTTESQ+HRELASGLSC
Sbjct: 121 GLHIARELLLNINELGLPAGTEFLDVISPQYIADLISWGAIGARTTESQIHRELASGLSC 180

Query: 181 PVGFKNGTDGNVKIAVDAIKAASQPHHFLSVTKGGHSAIVSTAGNEDCHIILRGGKQPNY 240
           PVGFKNGTDGNVKIAVDAIKAASQ HHFLSVTKGGHSAIVST+GNEDCHIILRGGK PNY
Sbjct: 181 PVGFKNGTDGNVKIAVDAIKAASQSHHFLSVTKGGHSAIVSTSGNEDCHIILRGGKTPNY 240

Query: 241 DAPSVDAACQDIAKSGLAARLMIDASHANSSKKPENQIPVCADIGRQIAGGDTRIVGVMV 300
           DA SV+ AC+DIA +GLA+RLMID SHANSSKKPENQIPVCADI +QIAGGDTRIVGVM+
Sbjct: 241 DAASVEQACKDIAANGLASRLMIDTSHANSSKKPENQIPVCADIAQQIAGGDTRIVGVMI 300

Query: 301 ESHLVAGRQDLVPGKELTYGQSITDGCINWEESLQVLQGLADSVKQRRL 349
           ESHLVAGRQDL+PGKEL YGQS+TDGCI+WE+SL VL+GLA++VKQRRL
Sbjct: 301 ESHLVAGRQDLIPGKELVYGQSVTDGCISWEDSLGVLEGLAEAVKQRRL 349


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 676,761
Number of extensions: 27578
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 274
Effective length of database: 726,862
Effective search space: 199160188
Effective search space used: 199160188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)