BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1238.p
         (268 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094100|ref|YP_001099175.1| putative Nitrilase [Herminiimon...   417   e-118
gi|134095233|ref|YP_001100308.1| putative Nitrilase [Herminiimon...    62   3e-11

>gi|134094100|ref|YP_001099175.1| putative Nitrilase [Herminiimonas
           arsenicoxydans]
          Length = 269

 Score =  417 bits (1071), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 192/269 (71%), Positives = 227/269 (84%), Gaps = 1/269 (0%)

Query: 1   MTQSF-KVAALQMVSTPEVEQNFDAAARLVAQAAQQGAQLVLLPEYWPIMGRHERDKLAH 59
           MT S  +VAA+QMVSTP VE+N   A RL+A AA QGA L+LLPEYW  MG HE DKL  
Sbjct: 1   MTNSLARVAAIQMVSTPSVEENIVTARRLIADAASQGASLILLPEYWAAMGMHENDKLGL 60

Query: 60  AEADGSGPIQQHMSALARQHRLWLVGGTLPLQSAVSDKVLNTSLVYGPDGQRVARYDKIH 119
           AE   +GPIQ  M+A AR+H +WL+GGTLP+ ++ +DKVLNT++VY P G+RV RYDKIH
Sbjct: 61  AEQIDAGPIQSFMAAAAREHSVWLIGGTLPMAASAADKVLNTTMVYNPAGERVKRYDKIH 120

Query: 120 LFNFVRGEENYDEARTIEYGSEVRSFEAPFGRVGLSVCYDLRFPELYRAMGECALIVMPA 179
           LF+F RG E+YDEARTI +G+EV +F+APFG+VGLSVCYDLRFPELYRAMG+C LIV+PA
Sbjct: 121 LFSFTRGTESYDEARTIAHGTEVTTFDAPFGKVGLSVCYDLRFPELYRAMGDCMLIVVPA 180

Query: 180 AFTYTTGRAHWELLLRARAIENQCYVLASAQGGQHVNGRRTWGHSMLVDPWGEIVSVLPE 239
           AFTYTTG+AHWE+LLRARAIENQCYVLA+AQGG+H NGR TWGHSML+DPWGEI  VL E
Sbjct: 181 AFTYTTGKAHWEILLRARAIENQCYVLAAAQGGRHRNGRTTWGHSMLIDPWGEIKDVLAE 240

Query: 240 GEGLVIGDIDPHRLQYVRESLPALRHRKL 268
           GEGLVIGDI+PH L  +RE+LPAL+HRKL
Sbjct: 241 GEGLVIGDIEPHHLTGIRENLPALKHRKL 269


>gi|134095233|ref|YP_001100308.1| putative Nitrilase [Herminiimonas
           arsenicoxydans]
          Length = 296

 Score = 62.0 bits (149), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 21/212 (9%)

Query: 13  VSTPEVEQNFDAAARLVAQAAQQG-AQLVLLPEYW---------PIMGRHERDKLAHAEA 62
           V  P   + F A  RLV + A++G A+L +LPEY          P + R     LA  +A
Sbjct: 10  VGKPTDFEAFAARQRLVLEEARRGGAELAVLPEYLSLELAATFKPSIRRDFNASLAALQA 69

Query: 63  DGSGPIQQHMSALARQHRLWLVGGTLPLQSAVSDKVLNTSLVYGPDGQRVARYDKIHLFN 122
                +  +   L+R+  + +  GT   Q  + D+  N +  + PDG R  + DK+ L  
Sbjct: 70  LQPAWLALYAD-LSRELCMTIQAGTFLTQVGL-DRYRNRAWWFAPDGTRDYQ-DKLQLTG 126

Query: 123 FVRGEENYDEARTIEYGSEVRSFEAPFGRVGLSVCYDLRFPELYRAMGECA--LIVMPAA 180
           F +      +   IE G E++ F+    R G++VCYD  FP   RA  E    L+++P+ 
Sbjct: 127 FEK------DTGVIEGGDELKVFDLNGVRAGIAVCYDSEFPLPVRAQREAGVRLLLVPSC 180

Query: 181 FTYTTGRAHWELLLRARAIENQCYVLASAQGG 212
                G     +   ARA+EN+ ++  +   G
Sbjct: 181 TDTQAGATRVRVGCMARALENRMFIAQAVTTG 212


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 505,035
Number of extensions: 19971
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 188
Effective length of database: 736,747
Effective search space: 138508436
Effective search space used: 138508436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)