BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1237.p (1435 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094099|ref|YP_001099174.1| hypothetical protein HEAR0860 [... 1304 0.0 >gi|134094099|ref|YP_001099174.1| hypothetical protein HEAR0860 [Herminiimonas arsenicoxydans] Length = 1403 Score = 1304 bits (3375), Expect = 0.0, Method: Compositional matrix adjust. Identities = 673/1403 (47%), Positives = 941/1403 (67%), Gaps = 19/1403 (1%) Query: 7 NATPQPGRWALCWRFARGSYRRLNRASHHVLGFTLKLLLVAYFVFCALFLVLRYAVLPEI 66 N T R LCWR + S+R N+ASHH LG+ LKLL++AYF+FCALFL LRYAVLP+I Sbjct: 9 NQTLTADRLRLCWRTLQLSFRTANKASHHALGWLLKLLVLAYFIFCALFLTLRYAVLPQI 68 Query: 67 GHYKPQIERLVSRQIGRAVSIDDIAASWRGLRPQLSLTNLTVHDQQGEPALRLPRISTTL 126 Y+ +E++ ++ IGR VSI+ IAASW GLRP L+L N+ V+D+ G+ AL+LP +S T+ Sbjct: 69 SAYRVDVEKVATKAIGRPVSIETIAASWDGLRPHLALGNVVVYDKDGDKALQLPAVSATV 128 Query: 127 SWSSLLVAGLRVENLSIEGADLAIRRDAAGKLYVAGIPV--PAGGDGSSLDWLLSQREIV 184 SW S+L+A LR+ +L I+ D+ I+RDA G YVAG+ V GDG + DW+LSQREI Sbjct: 129 SWLSVLIADLRLHSLEIDKPDMDIQRDANGNFYVAGLLVDLQKSGDGKAADWILSQREIT 188 Query: 185 IRHSKLRWDDELRAAPELVLQDVNLVLHNRWLRHRLSLRAIPPQDMAAPLDVRADFSHPA 244 IR +LRW D+LR APEL+L +VN+VL N H+ +L+A PP +AAPLDVRA F HP Sbjct: 189 IRDGRLRWQDQLRQAPELLLGNVNMVLRNNGRHHKFALQATPPAAIAAPLDVRAAFDHPL 248 Query: 245 FARS-SDISRWKGLLYADLRNTELAVWRAWIDYPIDIRSGRGSVRAWLTLDHAKVANFTA 303 FA+ SD +RW G LY DLR+T LA W+ ++D+P D++ GS+RAWL DHA+VA+FTA Sbjct: 249 FAQKISDATRWTGELYTDLRDTNLAAWKTYLDFPFDLQQASGSMRAWLAFDHARVADFTA 308 Query: 304 DLRLTDFNARLSRQLDPLSLKRVNGRISASETLGPNLEDGIPTFGTNGHQVTLTDFSIET 363 DL L++ +A+L + + LSL R NGRIS E+L N DG+PTFG GH +++ DFS++T Sbjct: 309 DLSLSNVSAQLRKDMPLLSLARANGRISVRESLEGNARDGVPTFGMRGHTISVRDFSLQT 368 Query: 364 PDGFVLPPTSIAESYEPATPLKAERTSVKATYLNLLTLSQLATRLPLAPSHRKLLDDLAP 423 DG VLP T+++E Y A K E ++A L+L + A RLPL + +LL+D AP Sbjct: 369 DDGLVLPKTTMSEHYIAAQNGKPESIEIQAASLDLQAWANFAGRLPLPATQLRLLEDFAP 428 Query: 424 RGELRDFTVQWQGSYPELSSYRVNGRFQNLGLKGLPAHVEPHRNGVRPARAQWAAFPGFS 483 RG+L++F+ Q QG+YP + +Y++ G F L LK PA + A+A A PGF Sbjct: 429 RGKLKNFSAQLQGTYPNIEAYKIKGDFMGLALKAQPARPARAASAKAAAQAAVPAIPGFE 488 Query: 484 NLSGEVDATEKGGSVKVDARQLAVQLPAELFSEPTMPFDTLKLQARWQFLKDQMLQVDLD 543 NL+G VDA +GG+ + + QL + LPA FSEP + FD LK+ A+W F K+ L +D+ Sbjct: 489 NLTGHVDANNQGGTFVLASEQLTLALPA-YFSEPEVTFDELKMDAKWAFQKNNQLLLDVR 547 Query: 544 QMQFTQPGVAGSLHGQHLVPLEGR---SMGSVDVSGELSSFDVKAVRRYLPPHLSEPLRH 600 +M + G+ S G HL+PL+ + ++G++D++G LS ++ + YLP ++ R Sbjct: 548 KMSLAKQGLVASFSGTHLMPLDKKPEHALGTIDMTGSLSGLELNKIGNYLPLGMNAQFRT 607 Query: 601 WLTEGLMAGTLKDVQFKLKGALADFPFHTAKPGDKPRGQFQLTGEFEGLKLNYTPGHLGR 660 WL++ L+AGTL D +LKG L FPFHT K +K +G+F G+ + LNY P GR Sbjct: 608 WLSDALIAGTLNDGYIRLKGDLNQFPFHTQKAAEKSKGEFIFGGKIDNGGLNYAPDMFGR 667 Query: 661 DGRDPEWPLLEEGRGRLSMDRTRLEIKADSARTLGARLGPVTARVADVDSHDAVLEIDGQ 720 DG+ P WPLLE +G + DRTR+EIK +S T GA++ V A VAD+ +++ VLEIDG+ Sbjct: 668 DGKAPLWPLLENVKGTILFDRTRMEIKGESGSTHGAQVSNVKAVVADLLANEPVLEIDGR 727 Query: 721 ATGPMPAFLQYVNQSPVARWTGNVMEHTTASGEARLDLKFQMPLHHAIETRAQGTFQFAN 780 A G + +QY SPVA W G+ + T ASG A L L +PLH E + +G +FAN Sbjct: 728 AAGSLQDMVQYTVDSPVATWIGHFTDETKASGNATLALNLTLPLHQMTEAKVRGVVKFAN 787 Query: 781 NDVDLLPELPPLYRTSGKVEFNEHGFTLNGVRGQFLGDTLAISGGTQKDGSSQVRLEGAI 840 N+V L +PP+ +T G++EF+E G TL ++ FLG L ++GGTQKDG+ ++ G + Sbjct: 788 NNVILQNAIPPITQTGGELEFDEKGLTLKNIKANFLGGPLTVTGGTQKDGTILIKAGGTM 847 Query: 841 NIDNLRKQYPEPSLQRLLARFSGGTRYTATVQVRQHQPEVSIDSNLVGLGVDLPLPLRKG 900 + LRK YP P++Q+L+ R SG T + T+ V+ + E+ +DSNL GLG+ P PLRK Sbjct: 848 SAAGLRKNYPAPAMQKLIDRISGSTSFGTTISVKNKRVEIVVDSNLRGLGLAFPAPLRKA 907 Query: 901 MQDSLPMRFDLLPLASADPLIEREEMRLALGANIAARYVRERVA-GKGNDWRVASGGIGW 959 +D+LP+R + L S + + R+ +RLALG +I Y+RE+ A WRV GGIG Sbjct: 908 AKDALPLRIEQASLPSENTALMRDGIRLALGPSIVGSYLREKSATDTAAAWRVVRGGIGV 967 Query: 960 NQPAPTPASGLKLALASDSLDVDAWLALKTALT--GKEAGAGGTSPSRLGSSDVTQYLEP 1017 N PAP P GL + + SL++D W+++ +++T GKE PS + ++ QY+EP Sbjct: 968 NTPAPEPDGGLMVNVNLRSLNIDDWISVASSITAAGKETQKKIADPS--DALNMAQYVEP 1025 Query: 1018 DSISARVGELTLMGKQLNKLVLEAAHRRNAWQINLESQQASGSVTWEDSGSGRGPGKVTA 1077 + ++AR EL LMGK+ +++V+ +H N WQ N++S QASG +TW +S SGRG GKVTA Sbjct: 1026 NILAARANELFLMGKKFDEVVVGVSHDTNVWQANIDSAQASGYLTWIESSSGRGLGKVTA 1085 Query: 1078 RLSTLIIPKSNPATDATQPTPASAVKADDNVQMPALDIRAEQFELGGKKLGRLELDASNI 1137 RL+++++PK+ A D D +MPALD+ AE FEL GKKLGRLEL A + Sbjct: 1086 RLASMVVPKTAGA-DVNNLLEG----VDSATEMPALDVVAENFELFGKKLGRLELLAHYV 1140 Query: 1138 VTSVGREWRISRLLLANPDAQFRAAGNWLSFGSNHTSNFTYALDIEDAGKLLERFGYPGT 1197 S GREWRI L LANPDA A G+WL+ ++ S+ Y L+I +AG LL RFG+ Sbjct: 1141 RASEGREWRIRNLSLANPDATLTAKGSWLAKNGSNVSSLDYNLNIANAGNLLNRFGFADV 1200 Query: 1198 IRGGHGKLDGDLSWKAPPYAMDMASLAGQVHMDVHSGQFLKVDPGAAKLLGVLNLQALPR 1257 +RGG GK++GD+SWK P++ D+ SL+G++++D+ SGQFLKV+PGAAKLLGVL+LQ++PR Sbjct: 1201 LRGGKGKMEGDISWKGLPFSFDVPSLSGKINLDIASGQFLKVEPGAAKLLGVLSLQSIPR 1260 Query: 1258 RLTLDFRDVFSQGFAFDTVAGTASIAKGIASTDNLKMTGVTASVLMSGSADIARETQDLH 1317 RLTLDFRDVFS+GFAFD + G+A I+ G+A+TDNLKM GV+A+VL+ GSADIARE+Q+L Sbjct: 1261 RLTLDFRDVFSEGFAFDGINGSARISSGVATTDNLKMRGVSATVLIDGSADIARESQNLR 1320 Query: 1318 VVVIPEINLGTASVV-AMAVNPVVGVSTLLAQLFLRNPVMKSLSFEYKVTGPWSDPIVVK 1376 VVIPEIN G ASV A+A+NPV+G T LAQLFLR P+ ++ ++EY +TGPWSDP V K Sbjct: 1321 AVVIPEINAGAASVAYALAINPVIGAGTFLAQLFLREPLARAFTYEYTITGPWSDPNVAK 1380 Query: 1377 -QGQVSPVDAERAKEVLQKGQEG 1398 + PV + + G EG Sbjct: 1381 VDRKTEPVPVAPKSGIAEPGTEG 1403 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 2,794,823 Number of extensions: 120154 Number of successful extensions: 284 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 275 Number of HSP's successfully gapped: 1 Length of query: 1435 Length of database: 1,000,347 Length adjustment: 94 Effective length of query: 1341 Effective length of database: 690,617 Effective search space: 926117397 Effective search space used: 926117397 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)