BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1236.p
         (922 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094098|ref|YP_001099173.1| glutamine-synthetase adenylyltr...  1222   0.0  

>gi|134094098|ref|YP_001099173.1| glutamine-synthetase
           adenylyltransferase [Herminiimonas arsenicoxydans]
          Length = 906

 Score = 1222 bits (3162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/898 (68%), Positives = 716/898 (79%), Gaps = 6/898 (0%)

Query: 30  STSRYYTRWTQADPARSALIASTAAQAIDRTIMQQRLEQDLAAGLSLPGAMRRLRNLIVC 89
           + SR+YTRW  AD +R+  +A     +++  I  + L+ +  AG SLP AMRR+RNL++ 
Sbjct: 10  TASRFYTRWLNADASRAQRVAEVGKLSLNSVIFGELLQNETDAGASLPAAMRRVRNLVIA 69

Query: 90  TLITRDLDGRADLAEVVATMTDFADFAVQTHLAALMQEQVALYGTPIGEESGRPQEMIVL 149
           TLI RDL G ADLAEVV TMT F DFAVQTHLAA+  E +A++GTP G ESG  QEMIVL
Sbjct: 70  TLIQRDLGGLADLAEVVDTMTTFGDFAVQTHLAAVSTELMAIHGTPTGHESGESQEMIVL 129

Query: 150 GMGKLGGGELNVSSDIDLIFVYPEDGDTQAEAG-QKSLSNHEFFVRLGKKLIGALAEITE 208
           GMGKLGGGELNVSSDIDLIFVY EDG+T A A  Q++LSNHEFF R+GKKLI AL+EITE
Sbjct: 130 GMGKLGGGELNVSSDIDLIFVYAEDGETVATAPEQRTLSNHEFFTRVGKKLIAALSEITE 189

Query: 209 DGFTFRVDMALRPNGNSGPLVASFNMVEEYLVRQGREWERYAWTKARALTGTAEDIATLE 268
           DGFTFRVDMALRPNG SGPLVASFNMVEEYL+ QGREWERYAW KARALTG   DI  LE
Sbjct: 190 DGFTFRVDMALRPNGASGPLVASFNMVEEYLIVQGREWERYAWVKARALTGKPSDIDALE 249

Query: 269 AISRPFIFRRYLDFGSIDALRSMHGQIRAEVKRQEALHPDRSNNVKLGRGGIREIEFTSQ 328
            I RPF++RRYLD+GSIDA+R+MH QIRAEV RQEA HPDRSNNVKLGRGGIREIEF +Q
Sbjct: 250 KIIRPFVYRRYLDYGSIDAIRNMHAQIRAEVTRQEARHPDRSNNVKLGRGGIREIEFLAQ 309

Query: 329 VFQLIRGGRDPDLRDRSTRTTLRTLAAKDLLAPEVVAQLLEAYTFLRDLEHRLQYLEDAQ 388
           VFQLIRGGRD  LRDRSTR  LRTLA K+L  PEVV QLL AYTFLR+LEHRLQYL+DAQ
Sbjct: 310 VFQLIRGGRDAALRDRSTRNILRTLAEKELFKPEVVEQLLHAYTFLRNLEHRLQYLDDAQ 369

Query: 389 THTLPVNPEDLLLVANMMGYADSPALLRELERQRAIVATQFDAIFADKQSEADSD----G 444
           THTLP N  D L+VA MMGY D PALL  LE QR +VATQFD IF+DK+++  +D     
Sbjct: 370 THTLPPNAADQLIVAQMMGYHDVPALLAALEEQRTLVATQFDEIFSDKKNDHAADDRAHA 429

Query: 445 PTVAVSENDNLEGLTDALRLVGFPQEDIEDGARRLHLTWQSPRMQSLPEASRNRLNTVIN 504
              AV  + + E + +A  L+    +   D A+RL  TW SPR+QSLPEASRN+L  ++N
Sbjct: 430 ELSAVLTDSDSERVIEAY-LLDLSFDHAADAAKRLLATWHSPRLQSLPEASRNKLVALVN 488

Query: 505 KCLPLLAALHYDQLPALGRLLDFLEAIARRAAYLALLTEYPYALQRLVRMIGASGWAATY 564
             LPL+  +   +   LGRLLDFLE IARRAAYLALLTEYP+AL+R++RMI AS WAA Y
Sbjct: 489 ASLPLIVKVSEARSTTLGRLLDFLETIARRAAYLALLTEYPHALERVIRMIAASDWAAKY 548

Query: 565 LTRHPLLLDELLDDRNLKAGSDWVAFADTCRRQLSAAEGDTERQLDILRELHHAELFRLL 624
           LTRHPLLLDELLDDR LKA  DW AFA  CR++L    GDTERQ+D+LRE+HHA+L RLL
Sbjct: 549 LTRHPLLLDELLDDRTLKAAPDWNAFARDCRQRLDETPGDTERQMDVLREMHHAQLIRLL 608

Query: 625 AQDLEGELSVEKLADELSALADVLVQVTIEAVWQTIAQRHREVPRFAVIAYGKLGGKELG 684
           AQDL G+LSVE+LAD LS LAD LV  TI+ +W+    RHRE P+F+VIAYGKLGGKELG
Sbjct: 609 AQDLLGDLSVERLADHLSELADRLVAATIQTIWKGFPNRHREEPKFSVIAYGKLGGKELG 668

Query: 685 YASDLDVVFLYDDDDQEAPGLYAKLAQRFITWMTSHTPAGTLFDIDIALRPDGASGLLVS 744
           YASDLDV+FLYDDDDQEAP LYAKLAQRFITWMT+HTPAG LFDIDIALRPDGASGLLVS
Sbjct: 669 YASDLDVIFLYDDDDQEAPALYAKLAQRFITWMTAHTPAGILFDIDIALRPDGASGLLVS 728

Query: 745 PVSSFEKYQLNAAWIWEHQALTRARFCAGDTAIGERFEALRERVLRQPRDVQKLEEEVLS 804
            +SSFEKYQ  +AW+WEHQALTRARFCAGD  IG RFEA+RE+VLRQ RD  +L++EVL 
Sbjct: 729 SISSFEKYQTTSAWLWEHQALTRARFCAGDAEIGARFEAIREKVLRQTRDPVELKKEVLE 788

Query: 805 MRGRMREAHPNRSQMFDLKHDEGGMIDIEFMVQYLVLRHACDHPQLTGDIGNIALLKLAA 864
           MR ++ +AHPNR+++FDLKHD GGMIDIEFMVQ+LVLR+A  HP+LTGDIGNIALLKL  
Sbjct: 789 MRKKLHDAHPNRTELFDLKHDTGGMIDIEFMVQFLVLRNAVHHPRLTGDIGNIALLKLCG 848

Query: 865 QLGLIDDLLAAEAANAYRLFRKLQHQIRLQGSERAHIDAIRVEHERACVIRLWQQVFG 922
           +LGLID  L+   A+AYR FRKLQH IRLQG+ERA ++  RV  E A V+ LW  +F 
Sbjct: 849 ELGLIDTALSVTVADAYRTFRKLQHNIRLQGAERARVEQERVATEVAAVVALWATLFS 906


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,650,399
Number of extensions: 65023
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 1
Length of query: 922
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 832
Effective length of database: 703,797
Effective search space: 585559104
Effective search space used: 585559104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)