BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1233.p
         (337 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094090|ref|YP_001099165.1| glyceraldehyde 3-phosphate dehy...   615   e-178

>gi|134094090|ref|YP_001099165.1| glyceraldehyde 3-phosphate
           dehydrogenase [Herminiimonas arsenicoxydans]
          Length = 336

 Score =  615 bits (1586), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 296/337 (87%), Positives = 321/337 (95%), Gaps = 1/337 (0%)

Query: 1   MAIRVAINGYGRIGRNILRAHYEGGKKHDIEIVAINDLGDPKTNAHLTQYDTAHGKFPGT 60
           M IRVAINGYGRIGRNILRAHYEGGKK+DI+IVAINDLGD K+NAHLT+YDTAHGKFPGT
Sbjct: 1   MTIRVAINGYGRIGRNILRAHYEGGKKNDIQIVAINDLGDAKSNAHLTRYDTAHGKFPGT 60

Query: 61  VTVDGDSIVVNGDRIKVLAQRNPAELPWGELGVDVVLECTGFFTTKEKASAHIKGGAKKV 120
           V VDGD ++VNGD+I+V AQR+PA++ WGEL VDVVLECTGFFTTKEKASAHI+GGAKKV
Sbjct: 61  VEVDGDYMIVNGDKIRVFAQRDPAQIGWGELNVDVVLECTGFFTTKEKASAHIRGGAKKV 120

Query: 121 IISAPGGKDVDATVVFGVNHGVLKASDTVISNASCTTNCLAPLVQPLNDKIGLENGLMTT 180
           IISAPGGKDVDAT+VFGVN+ VLKA+DTVISNASCTTNCLAPLV+PLNDKIGL NGLMTT
Sbjct: 121 IISAPGGKDVDATIVFGVNNNVLKATDTVISNASCTTNCLAPLVKPLNDKIGLVNGLMTT 180

Query: 181 VHAYTNDQVLTDVYHEDLRRARSATQSMIPTKTGAAAAVGLVLPQLNGKLDGYAIRVPTI 240
           VHAYTNDQVLTDV HEDLRRARSATQSMIPTKTGAA AVGLVLP+LNGKLDGYAIRVPTI
Sbjct: 181 VHAYTNDQVLTDVMHEDLRRARSATQSMIPTKTGAAVAVGLVLPELNGKLDGYAIRVPTI 240

Query: 241 NVSIVDLSFVASRDTTVDEVNSILKAASESGPLKGILTYNTDPLVSVDFNHNPASSNFDA 300
           NVSIVDLSF+A+RDTTV+E+N+I+K ASE G LKGILTY T+PLVSVDFNHNPASSNFD+
Sbjct: 241 NVSIVDLSFIAARDTTVEEINAIMKEASE-GALKGILTYQTEPLVSVDFNHNPASSNFDS 299

Query: 301 TLTKVSGRLVKVSSWYDNEWGFSNRMLDTTVALATAK 337
           TLTKVSGRLVKVSSWYDNEWGFSNRMLDTTVAL TAK
Sbjct: 300 TLTKVSGRLVKVSSWYDNEWGFSNRMLDTTVALMTAK 336


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 653,270
Number of extensions: 26848
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 255
Effective length of database: 730,157
Effective search space: 186190035
Effective search space used: 186190035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)