BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1231.p
         (664 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094088|ref|YP_001099163.1| transketolase [Herminiimonas ar...  1145   0.0  

>gi|134094088|ref|YP_001099163.1| transketolase [Herminiimonas
           arsenicoxydans]
          Length = 668

 Score = 1145 bits (2963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/663 (81%), Positives = 591/663 (89%)

Query: 1   MISTLPTDKMANAIRALAMDAVQKANSGHPGMPMGMAEIAVALWAKHYRHNPSNPHWANR 60
           M  TLPT KMANAIRALAMDAVQKANSGHPG PMGMA+IAVALW+ HY HNP+NP W NR
Sbjct: 1   MTFTLPTTKMANAIRALAMDAVQKANSGHPGAPMGMADIAVALWSNHYSHNPANPKWINR 60

Query: 61  DRFVLSNGHGSMLQYALLHLTGYDLSMEDIKSFRQLHSKTAGHPEVHITPGVETTTGPLG 120
           DRFVLSNGHGSML YALLHLTGYDLSM++I++FRQ+HSKT GHPEV ITPG+ETTTGPLG
Sbjct: 61  DRFVLSNGHGSMLHYALLHLTGYDLSMDEIRNFRQMHSKTPGHPEVDITPGIETTTGPLG 120

Query: 121 QGITNAVGMALAEKLLAAEFNKPGLAVVDHYTYAFVGDGCLMEGISHEACSLAGVLNLSK 180
           QGITNAVGMALAEKLLAAEFN+P   VVDH+TY F+GDGCLMEGISHEACSLAG L L K
Sbjct: 121 QGITNAVGMALAEKLLAAEFNRPNFNVVDHHTYVFLGDGCLMEGISHEACSLAGTLRLPK 180

Query: 181 LIVLYDDNGISIDGHVEGWFKDDTPKRFEAYGWNVIPAVDGHNVEAVSAAIHQAKLADKP 240
           LI  YDDNGISIDGHVEGWF+DDTPKRFEAYGWNV+ A+DGH+V AV AAI QAK +DKP
Sbjct: 181 LIAFYDDNGISIDGHVEGWFQDDTPKRFEAYGWNVVRAIDGHDVNAVDAAIKQAKASDKP 240

Query: 241 TLICCRTVIGKGSPNLAGTDKVHGAALGDKEIAAVREALGWTAAPFEIPADVYAAWDAKA 300
           TLICC+TVIGKGSPN+AGT  VHGAALGDKEIAA R A+GW  APFE+PADVYAAWDAKA
Sbjct: 241 TLICCKTVIGKGSPNMAGTHNVHGAALGDKEIAATRAAIGWGYAPFEVPADVYAAWDAKA 300

Query: 301 TGADFEASWKQTFDTYAAQYPAEAAELLRRLKGELPVAFESTVTAYINSTLEKKETIATR 360
            GA  E++W      YAAQYP  A+EL RR+ GELP   E TV AYI + +EKKETIATR
Sbjct: 301 KGAAQESAWNTLQQAYAAQYPELASELTRRMSGELPANLEQTVAAYIATCVEKKETIATR 360

Query: 361 KASQNAIQAYAQALPEFLGGSADLTGSNLTNWKESVAVRADQRGNHINYGVREFGMSAIM 420
           KASQNAIQA A  LPEFLGGSADLTGSNLTNWKE VAVRADQ GNHINYGVREFGMSAIM
Sbjct: 361 KASQNAIQALAPVLPEFLGGSADLTGSNLTNWKECVAVRADQWGNHINYGVREFGMSAIM 420

Query: 421 NGIALHGGYLPFGATFLTFSDYSRNALRMAALMKIRSLFVFTHDSIGLGEDGPTHQSVEH 480
           NGIALHGG++PFGATFLTFSDYSRNALRMAALMK+RS+FVFTHDSIGLGEDGPTHQSVEH
Sbjct: 421 NGIALHGGHIPFGATFLTFSDYSRNALRMAALMKLRSIFVFTHDSIGLGEDGPTHQSVEH 480

Query: 481 VSSLRLIPNLDNWRPCDTTETAVAWAESIKRHDGPSTLIFSRQNLPFQERTDAQVKDIAR 540
           VSSLRLIPNLDNWRPCDT E+AVAW +++KRH+GP+TLIFSRQNLPFQER+  Q+ +I R
Sbjct: 481 VSSLRLIPNLDNWRPCDTVESAVAWEQAVKRHNGPTTLIFSRQNLPFQERSAEQIANIKR 540

Query: 541 GGYVLRDAPNAKVVLMATGSEIELATKAADALTAEGIAVRVVSMPSTDVFDRQDSAYKAT 600
           GGYVLRDAPNA+V+L+ATGSEIELA K+AD L   G+AVR+VSMPSTDVFDRQD+AYKA 
Sbjct: 541 GGYVLRDAPNAQVILIATGSEIELAVKSADELAQHGMAVRIVSMPSTDVFDRQDAAYKAA 600

Query: 601 VLPRGVPRVAIEAGVTAFWHKYVGLEGAVVGIDTFGESAPAGVLFKHFGFTVENVVAKAK 660
           VL +GVPRVAIEAGVT FWHKYVGLEGAV+GIDTFGESAPAGVLFKHFGFTVENVVA AK
Sbjct: 601 VLTKGVPRVAIEAGVTDFWHKYVGLEGAVIGIDTFGESAPAGVLFKHFGFTVENVVAAAK 660

Query: 661 AVL 663
            V+
Sbjct: 661 NVV 663


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,329,442
Number of extensions: 57942
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 576
Effective length of database: 710,387
Effective search space: 409182912
Effective search space used: 409182912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)