BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1229.p (606 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095844|ref|YP_001100919.1| putative amidase [Herminiimonas... 86 4e-18 gi|134096406|ref|YP_001101481.1| putative amidase [Herminiimonas... 78 1e-15 gi|134093455|ref|YP_001098530.1| aspartyl/glutamyl-tRNA amidotra... 70 4e-13 gi|134095304|ref|YP_001100379.1| amidase [Herminiimonas arsenico... 65 1e-11 >gi|134095844|ref|YP_001100919.1| putative amidase [Herminiimonas arsenicoxydans] Length = 469 Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 112/392 (28%), Positives = 171/392 (43%), Gaps = 26/392 (6%) Query: 82 PLFGIPFAVKDNIDVAEMSTT-GACPEFGRLASESAAVVQRLQAAGALLVGKTNLDQFAT 140 PL G+P +VKD I V + T G+ +A A V R++AAGA +VG + +F Sbjct: 73 PLHGLPISVKDLIAVGGVRQTFGSRAMENNIAQVDAPSVARVKAAGACIVGISTTSEFGC 132 Query: 141 GLVGVRSPYGAVRNAIKPDYVSGGSSSGSAVAVALGQVLFSLGTDTAGSGRVPAAFNHLV 200 VG G RN + GGSS G+A +VA G F+LGTD GS R P++F L Sbjct: 133 KAVGDSPLTGITRNPWNIEKTPGGSSCGAAASVAAGVTPFALGTDGGGSIREPSSFTGLF 192 Query: 201 GLKPTKGLISARGLVPACR--TLDCISIFAHDVADAWRVLHSAAGFDTEDGYS---RRPT 255 G+K + + PA TL + A V DA +L AG D D +S P Sbjct: 193 GIKAQFARVP---VFPASATPTLAHVGPLARSVRDAALLLSVIAGHDARDPFSVAEDVPD 249 Query: 256 MLG---VKRRGYRIA-IPEHCEFFGDSVAQEAWERSLAQIAALPGVSLAKIPFAPFSAAA 311 L +G R+A P+ D+ E ++ + AL G + ++ S A Sbjct: 250 FLAACDAPIKGMRLAWSPDLGYAKPDAEIVRITEAAVKKFEAL-GCEIIELKGGIGSDPA 308 Query: 312 QLLYQGPWVAERRAALG----DFFLENQEAIHPVVRQITAQADDYDAVDSFNAQYRLADL 367 + W+AE A +G + +E + PVV +A D + ++ + Sbjct: 309 DM-----WLAEFYAGVGTRLHSVMRDQRELLDPVVVATLDKALDQSLLSYYSKVFERYQF 363 Query: 368 RRQAENLLAGSDLMLVPTT-TTFPTI-AEVEADPVVRN-AQLGHYTNFVNLMDMSALAIP 424 R + ++ DL+L PT P + +V A RN +YT NL A ++P Sbjct: 364 REKMRSMFTSFDLLLTPTAPIAAPNVGVDVPAQFADRNICSWQYYTYPFNLTGQPAASLP 423 Query: 425 GVWRRDGLPAGVTLIGPAGADHLLAEAGACFQ 456 + + GLP G+ L+ + + A A F+ Sbjct: 424 VGFTQSGLPVGLQLVANINRETDIFRAAAAFE 455 >gi|134096406|ref|YP_001101481.1| putative amidase [Herminiimonas arsenicoxydans] Length = 437 Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 126/434 (29%), Positives = 178/434 (41%), Gaps = 54/434 (12%) Query: 32 KVVAELLARIDRAGRDEV------WISRVPPKQLKQQAAALDLMLQIKGEAVLETMPLFG 85 +V AE +AR A +E+ W P Q QA LD Q G A L G Sbjct: 20 EVSAETVARASIARIEEMEPAVHAW-QHFDPAQAIAQARRLDA--QAPGGA------LHG 70 Query: 86 IPFAVKDNIDVAEMSTTGACPEF-GRLASESAAVVQRLQAAGALLVGKTNLDQFATGLVG 144 +P VKD +D A+M TT P + G A V + AGA+++GKT +FAT G Sbjct: 71 VPIGVKDLMDTADMPTTYGSPIYAGHQPQTDAICVAACRNAGAVIMGKTVTTEFATFHPG 130 Query: 145 VRSPYGAVRNAIKPD-----YVSGGSSSGSAVAVALGQVLFSLGTDTAGSGRVPAAFNHL 199 P K D + GGSSSGSA AVA G V + GT TAGS PAA+ + Sbjct: 131 ---PTCNPHRTHKADGTLQVHTPGGSSSGSAAAVACGMVPVAFGTQTAGSIVRPAAYCGV 187 Query: 200 VGLKPTKGLISARGLVPACRTLDCISIFAHDVADAWRVLHSAAGFDTEDGYSRRP--TML 257 VG KPT G++ G+ +LD + + A V DA + + SR P + Sbjct: 188 VGYKPTYGMLPLAGIKSLSPSLDTVGVLARSVGDAAFFIGT---------LSRLPLSPLP 238 Query: 258 GVKRRGYRIAI--PEHCEFFGDSVAQEAWERSLAQIAALPGVSLAKIPFAPFS---AAAQ 312 V + R+ I +H + A+ A ER+++ + A G L+ + + AQ Sbjct: 239 AVAQTRLRLGICRTQHWDRASHD-ARTALERAVSLLEAA-GARLSDVSLPDQCKGLSEAQ 296 Query: 313 LLYQGPWVAERRAALGDFFLENQEAIHPVVRQITAQADDYDAVDSFNAQYRLADLRRQAE 372 + G E A N + + A + D F AQ R Sbjct: 297 MRIMG---FEAALAFAPEAQANPDGFSNAFVRFIAAGNAIDGATYFAAQELAVAARCALT 353 Query: 373 NLLAGSDLMLVPTTTTF-PTIAEVEADPVVRNAQLGHYTNFVNLMDMSALAIPGVWRRDG 431 + D++L P+T P E DP+ + L+ + +P G Sbjct: 354 GIFNDVDILLAPSTEGVAPAGLEATGDPI--------FNRMWTLLGNPCVHVPLGTGAGG 405 Query: 432 LPAGVTLIGPAGAD 445 +P GVTLIGP D Sbjct: 406 MPIGVTLIGPRWGD 419 >gi|134093455|ref|YP_001098530.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Herminiimonas arsenicoxydans] Length = 485 Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 92/207 (44%), Gaps = 9/207 (4%) Query: 83 LFGIPFAVKDNIDVAEMSTTGACPEFGRLASE-SAAVVQRLQAAGALLVGKTNLDQFATG 141 L GIP A KD +T S A VV+ AG + +GK N D+FA G Sbjct: 66 LTGIPIAHKDIFVTRNWRSTAGSKMLENYVSPFDATVVENFNQAGMVTLGKLNCDEFAMG 125 Query: 142 LVGVRSPYGAVRNAIKPDYVSGGSSSGSAVAVALGQVLFSLGTDTAGSGRVPAAFNHLVG 201 S +GAV+N + GGSS GSA A+A S TDT GS R PAA + G Sbjct: 126 SSNENSYFGAVKNPWDKTAIPGGSSGGSAAAIAARLTPASTATDTGGSIRQPAALCGVTG 185 Query: 202 LKPTKGLISARGLVPACRTLDCISIFAHDVADAWRVLHSAAGFDTEDGYSRRPTMLGVKR 261 +KPT G +S G++ +LD A D +L++ FD D S R Sbjct: 186 IKPTYGRVSRFGMIAFASSLDQGGPIAKTAEDCGLLLNAMVSFDERDSTSVERDKEDFTR 245 Query: 262 ------RGYRIAIPEHCEFFGDSVAQE 282 G +I IP E+FG ++ + Sbjct: 246 DLNAPLEGLKIGIPR--EYFGAGLSAD 270 >gi|134095304|ref|YP_001100379.1| amidase [Herminiimonas arsenicoxydans] Length = 427 Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 25/215 (11%) Query: 25 EGRSTPGKVVAELLARIDRAGRDEV-----WISRVPPKQLKQQAAALDLMLQIKGEAVLE 79 E + + ++V E L RID R+EV +I R L + A+L ++G Sbjct: 12 EKKISSVELVEECLKRID--SREEVVGAWAYIDR----DLAIKEASLRDSQHVQG----- 60 Query: 80 TMPLFGIPFAVKDNIDVAEMSTT-GACPEFGRLASESAAVVQRLQAAGALLVGKTNLDQF 138 PL G+P +KD ID ++ T G+ G A+ V ++ AG +++GKT +F Sbjct: 61 --PLHGVPIGIKDVIDTIDLPTEYGSTIYAGHRPRREASCVSLVRRAGGVILGKTVTTEF 118 Query: 139 ATGLVGVRSPYGAVRNAIKPDYVSGGSSSGSAVAVALGQVLFSLGTDTAGSGRVPAAFNH 198 A + P G N P + GGSSSGSA AVA V ++GT T+GS PA++ Sbjct: 119 A-----LYQP-GKTTNPHNPAHTPGGSSSGSAAAVADFHVPVAMGTQTSGSIIRPASYCG 172 Query: 199 LVGLKPTKGLISARGLVPACRTLDCISIFAHDVAD 233 +VG KPT + G P +LD + V D Sbjct: 173 VVGYKPTFNTFALEGTKPLAASLDTLGYLTRTVDD 207 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,124,163 Number of extensions: 46538 Number of successful extensions: 172 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 4 Length of query: 606 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 519 Effective length of database: 713,682 Effective search space: 370400958 Effective search space used: 370400958 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)