BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1227.p
         (278 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permeas...    60   1e-10

>gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permease
           [Herminiimonas arsenicoxydans]
          Length = 304

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 14/217 (6%)

Query: 36  PIVGPIVLFVIWDLVVRAGWIKAILLPPPEATLMAMFKGLA-----GGPLLLDFSVTVVR 90
           PI G + L ++W+++      K   +P P  TL +     A      GP        ++ 
Sbjct: 57  PIFGVLFLVLVWEIISA----KNSGIPSPAVTLKSAIDLFADPFYSNGPNDQGIGWNILA 112

Query: 91  TLE----AFAIAAVLGLPIGVLLGSNERAYRSVEFLIDFFRSTPSSALIPLFLLIFGVSD 146
           +L+     F +AA++G+P+G ++G  +        +I   +     A +P+ LL+F  +D
Sbjct: 113 SLKRVAVGFGLAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVFKAAD 172

Query: 147 INKVAIAAFGAFLIVLFNSAYGVLNARKQRVMAAKVMGASRWRIFCDVLIWESLQASFVG 206
              +      +   ++ N+A GV    +  +  A+V+  S W+I   +L    L     G
Sbjct: 173 PAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKIVTKILFPSVLPYMLTG 232

Query: 207 LRSAVSMALVIVIVAEMFIGSENGLGHRIIDTQQVLN 243
           +R A+  A ++++ AEM  G   G+G  + D    LN
Sbjct: 233 VRLAIGTAWLVIVAAEMLTGGV-GIGFWVWDEWNNLN 268


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.141    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 461,938
Number of extensions: 17927
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 278
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 198
Effective length of database: 736,747
Effective search space: 145875906
Effective search space used: 145875906
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)