BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1226.p (285 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 155 2e-39 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 145 2e-36 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 137 8e-34 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 131 5e-32 gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 129 2e-31 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 155 bits (392), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/208 (41%), Positives = 124/208 (59%), Gaps = 7/208 (3%) Query: 26 ITIRGLTKYFAGWPLYENFDLDIPKQQIVSVFGPNGCGKSTLINMIAGLIPIDAGQILFD 85 + IR LT+ F + +N L I + ++ GP+GCGK+TL+ MIAG DAG+IL D Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLD 63 Query: 86 GKSLA-----QTKIGYVFQNYRDALFPWLRTIDNIAYPLKLEGKSKAEIKHRVDELVASF 140 G L Q + VFQNY ALFP + NIA+PL++ K+EIK +VDE + Sbjct: 64 GVDLTGVPPEQRVVRTVFQNY--ALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDV 121 Query: 141 DVKFDLMRYPYELSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQQVFL 200 + RYP+ELSGGQ+Q SI RAL P++L LDEP SALD ++ ++ +L + Sbjct: 122 RLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQK 181 Query: 201 QTGTTMVLVSHDLEEAVYLADQILLLTK 228 + G T V V+HD EA+ L+ +I ++ K Sbjct: 182 EVGITFVYVTHDQAEALALSHRIAVMNK 209 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 145 bits (366), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 130/212 (61%), Gaps = 11/212 (5%) Query: 26 ITIRGLTKYFAGWPLYENFDLDIPKQQIVSVFGPNGCGKSTLINMIAGLIPIDAGQILFD 85 I ++ + K F + + L+ P ++ ++ GP+GCGK+TL+ +IAGL D GQ+L D Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 86 G-----KSLAQTKIGYVFQNYRDALFPWLRTIDNIAYPLKLEGK----SKAEIKHRVDEL 136 G + + + ++G+VFQ+Y ALF + +NIA+ L++ S++ IK +V +L Sbjct: 63 GEDASARHVRERQVGFVFQHY--ALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKL 120 Query: 137 VASFDVKFDLMRYPYELSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQ 196 + + + RYP +LSGGQ+Q ++ RALA P VL LDEPF ALD ++ +R L+ Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 197 QVFLQTGTTMVLVSHDLEEAVYLADQILLLTK 228 ++ + T + V+HD EEA+ +ADQI+L+ K Sbjct: 181 RLHDELHVTSIFVTHDQEEALEVADQIVLMNK 212 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 137 bits (344), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 75/211 (35%), Positives = 127/211 (60%), Gaps = 12/211 (5%) Query: 43 NFDLDIPKQQIVSVFGPNGCGKSTLINMIAGLIPIDAGQILFDGKSLA--QTKIGYVFQN 100 + +L + K + +++ G +GCGKSTL+N+IAGL G +L + +A + VFQN Sbjct: 30 DINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGGMLLCGNREIAGPSPERAVVFQN 89 Query: 101 YRDALFPWLRTIDNIAYPL-----KLEGKSKAEIKHRVDELVASFDVKFDLMRYPYELSG 155 + +L PWL +N+ + K+EGK+K ++ R ++ + + P E+SG Sbjct: 90 H--SLLPWLTCYENVYLAVERVFGKVEGKAK--LRARTRAALSLVGLTHAEQKRPNEISG 145 Query: 156 GQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQQVFLQTGTTMVLVSHDLEE 215 G +Q I RAL+ P+VL +DEPF ALD ++++L ++ TG+T+V+V+HD++E Sbjct: 146 GMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHDVDE 205 Query: 216 AVYLADQILLLTKRPTA-VADILHYQDRRPR 245 AV L+D+I++LT P+A + +IL + PR Sbjct: 206 AVLLSDKIVMLTNGPSATIGEILEVKLAHPR 236 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 131 bits (329), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 119/212 (56%), Gaps = 17/212 (8%) Query: 25 HITIRGL-TKYFAGWPLYE---NFDLDIPKQQIVSVFGPNGCGKSTLINMIAGLIPIDAG 80 H+++ + Y G ++E + + + QI + G +GCGK+T++ IAG P+ G Sbjct: 14 HLSLESIRVGYRLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEG 73 Query: 81 QILFDGKSLAQT---------KIGYVFQNYRDALFPWLRTIDNIAYPLKLEGKSKAEIKH 131 I GK ++ +IG VFQ+Y ALFP L DN+ + L+ + E + Sbjct: 74 SITLGGKEISNAHFTATPETRQIGVVFQDY--ALFPHLSVADNVGFGLR--KLAAPERQA 129 Query: 132 RVDELVASFDVKFDLMRYPYELSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFI 191 R+ L+ + ++P+ELSGGQQQ ++ RALAP P++L LDEPFS LD ++ + Sbjct: 130 RIAALLTLVGLASQGKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERL 189 Query: 192 REKLQQVFLQTGTTMVLVSHDLEEAVYLADQI 223 +++ + + GTT VLV+HD EA +ADQI Sbjct: 190 ASEVRDILKEVGTTAVLVTHDQHEAFAIADQI 221 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 129 bits (323), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 131/235 (55%), Gaps = 12/235 (5%) Query: 26 ITIRGLTKYFA---GWP--LYENFDLDIPKQQIVSVFGPNGCGKSTLINMIAGLIPIDAG 80 I ++G+ K F G P + EN + + + +IV++ G +G GKSTL+ ++AGLI D G Sbjct: 7 IELKGVAKSFKTADGTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAADQG 66 Query: 81 QILFDGKSLAQ--TKIGYVFQNYRDALFPWLRTIDNIAYPLKLEGKSKAEIKHRVDELVA 138 + G+ + + I VFQ++ ALFPWL N+ L+ +G + E + R D ++ Sbjct: 67 TAKYRGQEIYSPVSGIAMVFQSF--ALFPWLTVQQNVELGLEAQGMAPDEREKRADAMLD 124 Query: 139 SFDVKFDLMRYPYELSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQQV 198 + P ELSGG +Q I R L GP+VL +DE FSALD +R+ + ++ Sbjct: 125 LIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEM 184 Query: 199 FLQT---GTTMVLVSHDLEEAVYLADQILLLTKRPTAVADILHYQDRRPRTVETL 250 + + +++VSH++EEAV +AD+IL+L+ P + + RPR V+++ Sbjct: 185 WEEKRIPTKGILIVSHNIEEAVMMADRILVLSSSPGRIRSEIRINLPRPRNVDSV 239 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 541,237 Number of extensions: 21678 Number of successful extensions: 203 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 45 Length of query: 285 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 204 Effective length of database: 733,452 Effective search space: 149624208 Effective search space used: 149624208 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)