BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1221.p (522 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 111 8e-26 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 110 1e-25 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 106 3e-24 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 99 4e-22 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 97 2e-21 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 111 bits (278), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 9/226 (3%) Query: 6 LEILNAGKSFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSILAD 65 +E+ N K +GSF+ L++ + V G + + G +G+GKSTL+K + G P +GSI D Sbjct: 2 IEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITVD 61 Query: 66 RREVDIRSARLPH-QLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWGSERAVLE-- 122 V LP + IGMV+Q+F L P L++ ENL L + R+ SE E Sbjct: 62 GISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQ----IRVLGRSEEEAAERG 117 Query: 123 -EFMARMPFKLATERLVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVLG 181 +++ R+ ++ LS G++Q++ I + L + ++ DEPTS L P+ +EVL Sbjct: 118 LKYLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLD 177 Query: 182 LMHALTRQQELTVLMITHKFNEVSAYADDVTVLRKGRLVASAKVAE 227 +M L Q +T++++TH+ A+ V + +G +V E Sbjct: 178 VMVGLA-QDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDE 222 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 144/520 (27%), Positives = 237/520 (45%), Gaps = 61/520 (11%) Query: 6 LEILNAGKSFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSP--------L 57 LEI N SF + + +++VS + AG AL+GE+G+GK+ ++ + L Sbjct: 4 LEIQNLQVSFDTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDAAYAGRIL 63 Query: 58 DQGSILADRREVDIRSARLPHQLGIGMVYQH--FTLAPSLTV----AENLLLARGDLPWR 111 +G + R E +R+ R + M++Q L P T+ AE L+L G Sbjct: 64 FEGQDILQRSEAAMRAVRGKD---VAMIFQEPMTALNPLFTIGNQIAEGLMLHEG---LS 117 Query: 112 IRWGSERAVLEEFMARMPFKLATERLVS---SLSAGEKQKLEILKQLYLRRRFLILDEPT 168 R + RA+ E + + R +S LS G++Q+ I L + + LI DEPT Sbjct: 118 ARIAALRAI--ELLDKTGIPEPQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEPT 175 Query: 169 SVLTPQEADEVLGLMHALTRQQELTVLMITHKFNEVSAYADDVTVLRKGRLVASAKVAE- 227 + L +++ L++ L R++ + VLMITH N V +AD V V+ KG LV A E Sbjct: 176 TALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATREL 235 Query: 228 -TSPDALAHWMMGHAREEKL--AVARAAVPPQAAIGLEVKDLTVNNDRG------VAAVR 278 T+P + ++ ++L + +AVP +A E T + +G AV Sbjct: 236 FTAPRETYTRKLLASQPQQLVNTLNESAVPLLSA---EHVRCTFDIKQGWFKTTPFVAVD 292 Query: 279 ALSLQVKHGEIVGLAGISGNGQKELVEALLG-QRRHLLGQIRVEGAPYAATREE-MRRLR 336 +S+QV+ GE +G+ G SG+G+ L ALL + G I +G P A + + +R LR Sbjct: 293 DVSVQVRPGETLGIVGESGSGKTTLGLALLRLSSARVSGTIAFDGKPLNAMQSDALRPLR 352 Query: 337 -----VFALPEEPLRNACIPGMSVAENMALRHFDVAPFKRRGWRIDRGAMKRQAQALIAA 391 VF P L V E +AL + G K A AL+ Sbjct: 353 ARMQIVFQDPFASLSPRRTIEQIVGEGLALHQPQLGA---------AGIRKAVADALLEV 403 Query: 392 FNVKPPVPERPIGTLSGGNVQRAVLARELGEEDLDGAANVLIVANPVFGLDFASVADIHA 451 + P + R SGG QR +AR L + +++++ P LD + + Sbjct: 404 -GLPPDIMARYPHEFSGGQRQRIAIARVLVLK-----PDLVLLDEPTSSLDVSVQQQVLQ 457 Query: 452 RLLQARARGA-AVLLVSEDLDELLELSDRILVMTEGRIVH 490 LL+ + + A + +S DL + ++ R++VM +G++V Sbjct: 458 LLLELQKKYELAYIFISHDLAVIRAMAHRVMVMKDGKVVE 497 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 24/220 (10%) Query: 18 FRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSPLD-QGSILADRREVD-IRSAR 75 F A+D+VS++VR G ++GE+G+GK+TL L+ S G+I D + ++ ++S Sbjct: 288 FVAVDDVSVQVRPGETLGIVGESGSGKTTLGLALLRLSSARVSGTIAFDGKPLNAMQSDA 347 Query: 76 L-PHQLGIGMVYQ--HFTLAPSLT----VAENLLLARGDL-PWRIRWGSERAVLE----- 122 L P + + +V+Q +L+P T V E L L + L IR A+LE Sbjct: 348 LRPLRARMQIVFQDPFASLSPRRTIEQIVGEGLALHQPQLGAAGIRKAVADALLEVGLPP 407 Query: 123 EFMARMPFKLATERLVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVLGL 182 + MAR P + S G++Q++ I + L L+ ++LDEPTS L +VL L Sbjct: 408 DIMARYPHEF---------SGGQRQRIAIARVLVLKPDLVLLDEPTSSLDVSVQQQVLQL 458 Query: 183 MHALTRQQELTVLMITHKFNEVSAYADDVTVLRKGRLVAS 222 + L ++ EL + I+H + A A V V++ G++V S Sbjct: 459 LLELQKKYELAYIFISHDLAVIRAMAHRVMVMKDGKVVES 498 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 106 bits (264), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 18/291 (6%) Query: 4 LELEILNAGKSFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSIL 63 + +E+ N K FG+F AL++VSL+ AG + ALLG +G GK+TL++ + G D G +L Sbjct: 1 MSIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 64 ADRREVDIRSARLPHQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWGSER---AV 120 D + R R + +G V+QH+ L +TV EN+ R+R + R +V Sbjct: 61 LDGEDASARHVR---ERQVGFVFQHYALFKHMTVFENIAFG-----LRVRPAATRPSESV 112 Query: 121 LEEFMARM----PFKLATERLVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEA 176 ++E + ++ +R LS G++Q++ + + L + R L+LDEP L + Sbjct: 113 IKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVR 172 Query: 177 DEVLGLMHALTRQQELTVLMITHKFNEVSAYADDVTVLRKGRLVASAKVAETSPDALAHW 236 E+ + L + +T + +TH E AD + ++ KG + + + + + Sbjct: 173 KELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPF 232 Query: 237 MMGHAREEKLAVARA--AVPPQAAIGLEVKDLTVNND-RGVAAVRALSLQV 284 + G L R V + I + D D RG+ VR L+V Sbjct: 233 VYGFLGNVNLFRGRVHEGVLQSSGIAFDAPDHAKTQDARGIGYVRPHDLEV 283 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 26/233 (11%) Query: 14 SFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSILADRREVDIRS 73 +FG A D+VS ++AGT+H+++G NGAGKST + + G+ GSI I + Sbjct: 356 AFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSI---EFMGQIAT 412 Query: 74 ARLPHQL---GIGMVYQHFTLAPSLTVAENLLLARGD------------LPWRI----RW 114 A+ HQL G+ +Q+ L +T EN+L+ LP R+ Sbjct: 413 AKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLPSYFHDERRY 472 Query: 115 GSERAVLEEFMARMPFKLATERLVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQ 174 +E L E++ + E +L G +++LEI + L + + L+LDEP + LT Sbjct: 473 AAEARCLLEYVGLDDYA---EEKARNLPFGHQRRLEIARALAMSPKLLLLDEPAAGLTHG 529 Query: 175 EADEVLGLMHALTRQQELTVLMITHKFNEVSAYADDVTVLRKGRLVASAKVAE 227 E ++++ L+ L Q +TVL++ H + + A +D VTVL G+++AS VAE Sbjct: 530 EIEDLMKLIRNLASHQ-ITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVAE 581 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 19/221 (8%) Query: 6 LEILNAGKSFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSILAD 65 LEI N + FG +D +SL + AG LLG +G GK+TL++ + G+ D G IL D Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLD 63 Query: 66 RREVDIRSARLPHQLGIGMVYQHFTLAPSLTVAENLLL-------ARGDLPWRIRWGSER 118 VD+ P Q + V+Q++ L P +TVA N+ + ++ ++ E Sbjct: 64 G--VDLTGVP-PEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALED 120 Query: 119 AVLEEFMARMPFKLATERLVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADE 178 L F AR P + LS G++Q++ I + L R + L+LDEP S L Q ++ Sbjct: 121 VRLTGFAARYPHE---------LSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQ 171 Query: 179 VLGLMHALTRQQELTVLMITHKFNEVSAYADDVTVLRKGRL 219 + + L ++ +T + +TH E A + + V+ KG + Sbjct: 172 MQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNI 212 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 905,795 Number of extensions: 35799 Number of successful extensions: 318 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 258 Number of HSP's successfully gapped: 51 Length of query: 522 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 436 Effective length of database: 716,977 Effective search space: 312601972 Effective search space used: 312601972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)