BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1218.p
         (233 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094688|ref|YP_001099763.1| GntR family transcriptional reg...    84   6e-18

>gi|134094688|ref|YP_001099763.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 220

 Score = 84.0 bits (206), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 8/191 (4%)

Query: 17  IKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGWKVCPIDF 76
           I++ I   +L PG +  ETE+A+  GVSRTP+R+AL +L   G + +  RRG  V  I  
Sbjct: 12  IEEMIAVGKLPPGHHLDETELAKEFGVSRTPIREALIQLASMGIIVIRPRRGAIVAEIGP 71

Query: 77  DRLDNLYDLRIVLEMAALDKLCSQQQATAALEQLNAIWLVEPEARE-ADAVRVAELDEAF 135
            +L  ++++   LE A   +L +++ + A    L A  L   EAR+ AD+      +E F
Sbjct: 72  QQLIEMFEVMAELE-AMCARLAARRMSPAGHATLKATHLACEEARDSADSDAYFYKNEEF 130

Query: 136 HTNLVAAAGN---QEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEEHGKILQLIAKRKS 192
           H  +   + N   +E  RV   +  ++R  RRL    + R++A+++EHG ++  I + K 
Sbjct: 131 HQQIYIGSQNSFLEEQARV---LQRRLRPYRRLQLRVRNRVQASFDEHGAVVDAIIEGKG 187

Query: 193 TEAQILLRAHI 203
             A  LLR HI
Sbjct: 188 ELAAELLRQHI 198


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 374,238
Number of extensions: 12509
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 3
Length of query: 233
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 154
Effective length of database: 740,042
Effective search space: 113966468
Effective search space used: 113966468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)